View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17765_low_8 (Length: 458)
Name: NF17765_low_8
Description: NF17765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17765_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 174 - 446
Target Start/End: Complemental strand, 46030852 - 46030580
Alignment:
| Q |
174 |
tctgtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacatctggcatgcggtttgactctaatg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||| |
|
|
| T |
46030852 |
tctgtgttttaggttggagcagatgaatttgggtatatgttggctgatattttaaagcaaaataacgtggatacatctggcatgcggtttgattctgatg |
46030753 |
T |
|
| Q |
274 |
ccagaaccagattggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgctgatatgcttttggataagtcata |
373 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
46030752 |
ccagaaccgcattggcttttgttacacttagagctgatggcgagcgcgagttcttgtttttccgaaatcctagtgctgatatgcttctggataagtcaga |
46030653 |
T |
|
| Q |
374 |
gcttgatcataacctcatcgagaagatgcctttaatttccatctctgtttatacaatgtggccataaagacct |
446 |
Q |
| |
|
|||||| ||||||||||| |||||| | |||| ||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
46030652 |
gcttgaccataacctcattgagaaggtaccttgaatttccatatctgtttataaaatgtggccataaagacct |
46030580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 151 - 448
Target Start/End: Complemental strand, 30412364 - 30412069
Alignment:
| Q |
151 |
aatgatagattaactccttaccatctgtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacatc |
250 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
30412364 |
aatgatagcttaactccttaccat--gtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataacgtcgatacatc |
30412267 |
T |
|
| Q |
251 |
tggcatgcggtttgactctaatgccagaaccagattggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgct |
350 |
Q |
| |
|
||||||||||||||| | ||||||||||||| || | ||||| |||| |||||| ||||| | | || ||||||| ||||| |||||||||||||||| |
|
|
| T |
30412266 |
tggcatgcggtttgattttaatgccagaaccccatcgactttttttacaattagagctgatggcaaacgcgagttctcgtttttccgaaatcctagtgct |
30412167 |
T |
|
| Q |
351 |
gatatgcttttggataagtcatagcttgatcataacctcatcgagaagatgcctttaatttccatctctgtttatacaatgtggccataaagacctat |
448 |
Q |
| |
|
||||||||| ||||| || || |||||||| |||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
30412166 |
gatatgcttctggatgagacaaagcttgattgtaacctcatcaagaaggtgcctttaatttccatctctgtttataaaatgtggtcataaagacctat |
30412069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 184 - 449
Target Start/End: Original strand, 30097759 - 30098024
Alignment:
| Q |
184 |
aggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacatctggcatgcggtttgactctaatgccagaaccag |
283 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||| |
|
|
| T |
30097759 |
aggttggagcagatgaatctgggtattcgttggttgatattttaaaggaaaataatgttgatacatctggcatgcgtgttgattctaatggcagcaccac |
30097858 |
T |
|
| Q |
284 |
attggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgctgatatgcttttggataagtcatagcttgatcat |
383 |
Q |
| |
|
|||||||| || | ||||||| |||| |||||| ||| || ||||| | |||||||| |||||||||||||| || || ||||| ||||||||| | |
|
|
| T |
30097859 |
attggcttatgttgaacttagacctgatcgcgagcgcaagtgctcgtttttcagaaatcctggtgctgatatgcttctgtatgagtcagagcttgatcgt |
30097958 |
T |
|
| Q |
384 |
aacctcatcgagaagatgcctttaatttccatctctgtttatacaatgtggccataaagacctatg |
449 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30097959 |
aaactcatcgagaaggtgcctttaatttccatctctgtttatacaatgtggccataaagacctatg |
30098024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 150 - 445
Target Start/End: Complemental strand, 23899539 - 23899247
Alignment:
| Q |
150 |
aaatgatagattaactccttaccatctgtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacat |
249 |
Q |
| |
|
||||||||| ||||||| |||||||||| ||||||||||||| ||||||||| |||||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
23899539 |
aaatgatagcttaactcattaccatctgcgttttaggttggaccagatgaatctgggtatacgttggttgatgttttaaaggaaaataatgttgatacat |
23899440 |
T |
|
| Q |
250 |
ctggcatgcggtttgactctaatgccagaaccagattggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgc |
349 |
Q |
| |
|
||||||||| | |||| ||||||||||| |||| |||| || || | |||||||| ||||| ||||| |||| || | ||| | ||||||||||||| |
|
|
| T |
23899439 |
ctggcatgctggttgattctaatgccagcaccatattgtattatgttttacttagagctgatggggagcgcgagtgctcgcttttcagaaatcctagtgc |
23899340 |
T |
|
| Q |
350 |
tgatatgcttttggataagtcatagcttgatcataacctcatcgagaagatgcctttaatttccatctctgtttatacaatgtggccataaagacc |
445 |
Q |
| |
|
| |||||||| || || ||| || |||||| ||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23899339 |
taatatgcttctgtat---tcagaggttgatcgtaaactcatcaagaaggtgcctttaatttccatctctgtttataaaatgtggccataaagacc |
23899247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 150 - 445
Target Start/End: Complemental strand, 25430333 - 25430041
Alignment:
| Q |
150 |
aaatgatagattaactccttaccatctgtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacat |
249 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
25430333 |
aaatgatagcttaactcattaccatctgtgttttaggttggaccagatgaatctgggtatacgttggttgatgttttaaaggcaaataatgttgatacat |
25430234 |
T |
|
| Q |
250 |
ctggcatgcggtttgactctaatgccagaaccagattggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgc |
349 |
Q |
| |
|
||||||||| | |||| ||||||||||| ||| |||| || || | |||||||| ||||| ||||| |||| |||| ||| | | ||||||||||| |
|
|
| T |
25430233 |
ctggcatgctggttgattctaatgccagcacccaattgcattatgttttacttagagctgatggggagcgcgagtgcttgcttttcagtaatcctagtgc |
25430134 |
T |
|
| Q |
350 |
tgatatgcttttggataagtcatagcttgatcataacctcatcgagaagatgcctttaatttccatctctgtttatacaatgtggccataaagacc |
445 |
Q |
| |
|
| |||||||| || || ||| || |||||| ||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25430133 |
taatatgcttctgtat---tcagaggttgatcgtaaactcatcaagaaggtgcctttaatttccatctctgtttataaaatgtggccataaagacc |
25430041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 150 - 445
Target Start/End: Original strand, 24970376 - 24970668
Alignment:
| Q |
150 |
aaatgatagattaactccttaccatctgtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacat |
249 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
24970376 |
aaatgatagcttaactcattaccatctgtgttttaggttggaccagatgaatttgggtatacgttggttgatgttttaaaggcaaataatgttgatacat |
24970475 |
T |
|
| Q |
250 |
ctggcatgcggtttgactctaatgccagaaccagattggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgc |
349 |
Q |
| |
|
||||||||| | |||| ||||||||||| ||| ||| || || | ||||||| ||||| ||||| |||| || | ||||| | ||||||||||| |
|
|
| T |
24970476 |
ctggcatgctggttgattctaatgccagcacccagttgcattatgttttccttagagctgatggggagcgcgagtgctggctttccggtaatcctagtgc |
24970575 |
T |
|
| Q |
350 |
tgatatgcttttggataagtcatagcttgatcataacctcatcgagaagatgcctttaatttccatctctgtttatacaatgtggccataaagacc |
445 |
Q |
| |
|
| |||||||| || || ||| || |||||| ||| |||||| ||||| |||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
24970576 |
taatatgcttctgtat---tcagaggttgatcgtaaactcatcaagaaggtgcctttaatttccatctttgtttataaaatgtggccataaagacc |
24970668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 182 - 445
Target Start/End: Complemental strand, 25434870 - 25434610
Alignment:
| Q |
182 |
ttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacatctggcatgcggtttgactctaatgccagaacc |
281 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| | |||| ||||||||||| ||| |
|
|
| T |
25434870 |
ttaggttggaccagatgaatctgggtatacgttggttgatgttttaaaggaaaataatgttgatacatctggcatgctggttgattctaatgccagcacc |
25434771 |
T |
|
| Q |
282 |
agattggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgctgatatgcttttggataagtcatagcttgatc |
381 |
Q |
| |
|
| |||| || || | |||||||| ||||| ||||| ||| || | ||| | |||||||||||||| |||||||| || || ||| || ||||| |
|
|
| T |
25434770 |
acattgtattatgttttacttagagctgatggggagcgcaagtgctcgcttttcagaaatcctagtgctaatatgcttctgtat---tcagaggttgatt |
25434674 |
T |
|
| Q |
382 |
ataacctcatcgagaagatgcctttaatttccatctctgtttatacaatgtggccataaagacc |
445 |
Q |
| |
|
||| |||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25434673 |
gtaaactcatcaagaaggtgcctttaatttccatctctgtttataaaatgtggccataaagacc |
25434610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 150 - 316
Target Start/End: Complemental strand, 20012314 - 20012142
Alignment:
| Q |
150 |
aaatgatagattaactccttaccatctgtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacat |
249 |
Q |
| |
|
||||||||| ||||||| ||||| |||| ||||||||||||||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
20012314 |
aaatgatagcttaactcattaccgtctgcgttttaggttggagcagataaagctgggtatttgttggttgatcttttaaaggaaaataatgttgatacat |
20012215 |
T |
|
| Q |
250 |
ctggcatgcgg------tttgactctaatgccagaaccagattggcttttggtacacttagagttgatgacga |
316 |
Q |
| |
|
||||||||||| ||||| | ||||| ||| |||| |||||||| || | ||||||||| ||||||||| |
|
|
| T |
20012214 |
ctggcatgcgggttgattttgattataatgtcagcaccaaattggcttatgtttcacttagagctgatgacga |
20012142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 173 - 359
Target Start/End: Original strand, 22690191 - 22690377
Alignment:
| Q |
173 |
atctgtgttttaggttggagcagatgaatttgggtatatgttggttgatattttaaagcaaaataatgttgatacatctggcatgcggtttgactctaat |
272 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||| || ||||||| ||||||| ||||||| || || |||||||| ||||| |||||||||||||||||| |
|
|
| T |
22690191 |
atctctgtattaggttggagcagatgagtttggttacatgttggctgatattctaaagcagaacaacgttgatacttctggaatgcggtttgactctaat |
22690290 |
T |
|
| Q |
273 |
gccagaaccagattggcttttggtacacttagagttgatgacgagcgtgagttcttgttttcccgaaatcctagtgctgatatgctt |
359 |
Q |
| |
|
|| ||||| ||| ||||||| ||||||||| || | |||||| ||||||||||||| || ||||| ||||||||||||||| |
|
|
| T |
22690291 |
gcaagaactgcattagcttttgtcacacttagatccgacggcgagcgcgagttcttgttttttcggaatccaagtgctgatatgctt |
22690377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University