View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17766_high_7 (Length: 233)
Name: NF17766_high_7
Description: NF17766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17766_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 8107007 - 8106862
Alignment:
| Q |
34 |
gtttcaaattcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatcaaaatagatcatgacactca |
133 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8107007 |
gtttcaaattcatttaatgtttctttatcatccaatcaaaattgattatgactcatctat----tttacaacaaccaatcaaaatagatcatgacactca |
8106912 |
T |
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| Q |
134 |
tttgttaatcaatgtataannnnnnngcctatttaattagatgtctattt |
183 |
Q |
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| T |
8106911 |
tttgttaatcaatgtataatttttttgcctatttaattagatgtctattt |
8106862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 34 - 145
Target Start/End: Complemental strand, 8111653 - 8111546
Alignment:
| Q |
34 |
gtttcaaattcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatcaaaatagatcatgacactca |
133 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8111653 |
gtttcaaattcatttaatgtttctttatcatccaatcaaaattgattatgactcatc----tattttacaacaaccaatcaaaatagatcatgacactca |
8111558 |
T |
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| Q |
134 |
tttgttaatcaa |
145 |
Q |
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|||||||||||| |
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| T |
8111557 |
tttgttaatcaa |
8111546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 146
Target Start/End: Complemental strand, 772690 - 772590
Alignment:
| Q |
42 |
ttcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatc--aaaatagatcatgacactcatttgtt |
139 |
Q |
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| T |
772690 |
ttcatttaatgtttctttatcattcaatcaaaatgaattatgactcatc----tatttttcaacaaccaatcaaaaaatagatcatg--actcatttgtt |
772597 |
T |
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| Q |
140 |
aatcaat |
146 |
Q |
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||||||| |
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|
| T |
772596 |
aatcaat |
772590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 25113515 - 25113457
Alignment:
| Q |
43 |
tcatttaatatttctttatcatccaatcaaaattgattatgactcatctatatatttta |
101 |
Q |
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||||||||| ||| ||||||||||||| ||||| |||||||||||| ||||||||||| |
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| T |
25113515 |
tcatttaatgtttttttatcatccaattaaaatagattatgactcacttatatatttta |
25113457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 10894546 - 10894588
Alignment:
| Q |
43 |
tcatttaatatttctttatcatccaatcaaaattgattatgac |
85 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
10894546 |
tcatttaatgttttcttatcatccaatcaaaattgattatgac |
10894588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Complemental strand, 38050289 - 38050247
Alignment:
| Q |
43 |
tcatttaatatttctttatcatccaatcaaaattgattatgac |
85 |
Q |
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||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
38050289 |
tcatttaatattttcttatcatccaatcaaaatggattatgac |
38050247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 30890182 - 30890105
Alignment:
| Q |
37 |
tcaaattcatttaatatttcttt-atcatccaatcaaaattgattatgactcatctatatattttacaacaaccaatcaaaa |
117 |
Q |
| |
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||||||||||||||| ||| ||| |||||||||||||||| ||| ||||||| ||||||||| ||||||||||| |||| |
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| T |
30890182 |
tcaaattcatttaatgttttttttatcatccaatcaaaatagatcatgactc----atatatttttcaacaaccaataaaaa |
30890105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 501099 - 501141
Alignment:
| Q |
43 |
tcatttaatatttctttatcatccaatcaaaattgattatgac |
85 |
Q |
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|||||||||| || |||||||||||||||||||||||||||| |
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| T |
501099 |
tcatttaatactttcttatcatccaatcaaaattgattatgac |
501141 |
T |
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