View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17766_low_2 (Length: 444)
Name: NF17766_low_2
Description: NF17766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17766_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 46463206 - 46462771
Alignment:
| Q |
1 |
caagtggaagatattagaagatttcttttcaagtataagggaactattacattcacttgaaaaaaggataattnnnnnnntctcaaagaagaaactatat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46463206 |
caagtggaagatattagaagatttcttttcaagtataagagaactattacattcacttgaaaaaaggataattaaaaaaatctcaaagaagaaactatat |
46463107 |
T |
|
| Q |
101 |
gacaatatacacagttccatatattggtttctaacaaaaatctacagattttaattcattccctatagaacagaaatctaatacacaagggaggtaccct |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46463106 |
gacaatatacacagttccatatattggtttctaacaaaaatctacagattttaattcattccctatagaacagaaatctattacacaagggaggtaccct |
46463007 |
T |
|
| Q |
201 |
taacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactc |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463006 |
taacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactc |
46462907 |
T |
|
| Q |
301 |
aacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462906 |
aacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaac |
46462807 |
T |
|
| Q |
401 |
aaaccctgtccatttgctatttccaccccctttgct |
436 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| |
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| T |
46462806 |
aaaccctgtccttttgctatttccacccccattgct |
46462771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 172 - 436
Target Start/End: Complemental strand, 46452067 - 46451803
Alignment:
| Q |
172 |
agaaatctaatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
271 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452067 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46451968 |
T |
|
| Q |
272 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451967 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46451868 |
T |
|
| Q |
372 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgct |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
46451867 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgct |
46451803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 172 - 436
Target Start/End: Original strand, 46344489 - 46344753
Alignment:
| Q |
172 |
agaaatctaatacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
271 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344489 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46344588 |
T |
|
| Q |
272 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344589 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46344688 |
T |
|
| Q |
372 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgct |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
46344689 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttccacccccattgct |
46344753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 182 - 435
Target Start/End: Complemental strand, 46466447 - 46466194
Alignment:
| Q |
182 |
tacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataa |
281 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |
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| T |
46466447 |
tacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatga |
46466348 |
T |
|
| Q |
282 |
caccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccacc |
381 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||||||| |
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|
| T |
46466347 |
taccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccacc |
46466248 |
T |
|
| Q |
382 |
accagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgc |
435 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||| |||||||||| |||| |
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|
| T |
46466247 |
accagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgc |
46466194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 182 - 435
Target Start/End: Complemental strand, 46471652 - 46471399
Alignment:
| Q |
182 |
tacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataa |
281 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |
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| T |
46471652 |
tacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatga |
46471553 |
T |
|
| Q |
282 |
caccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccacc |
381 |
Q |
| |
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|||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| |||||||| |
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| T |
46471552 |
taccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccacc |
46471453 |
T |
|
| Q |
382 |
accagatatttgatcaaacaaaccctgtccatttgctatttccaccccctttgc |
435 |
Q |
| |
|
||||||||||||||| ||||||||||| || ||||||| |||||||||| |||| |
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|
| T |
46471452 |
accagatatttgatcgaacaaaccctgcccttttgctaattccacccccattgc |
46471399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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