View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17766_low_3 (Length: 436)
Name: NF17766_low_3
Description: NF17766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17766_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 156 - 411
Target Start/End: Original strand, 7281914 - 7282169
Alignment:
| Q |
156 |
ttgttaaaataagatatgcttttgatgt-gtaaagttg-ctgcagtatgttacttcgcttattgtttttctgctgtttcagagagtattcacggcaagaa |
253 |
Q |
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| T |
7281914 |
ttgtttaaataagatacacttttgatggcgtaaagttggctgcagtatgtcactttgcttattgtttttctgctatttcagaaagtattcacggcaagaa |
7282013 |
T |
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| Q |
254 |
tacttgaagaaaagagaggaaaataaattagaagaactgaggtatggttctacttccgtttcatttattttcttaaggttgtttccagttctgattttct |
353 |
Q |
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| T |
7282014 |
tacttgaagaaaagggaggaaaagaaattagaagaactgaggtatgattctacttccgttttgtttattttcgtaaggttgtttccagttctgattttct |
7282113 |
T |
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| Q |
354 |
gtcgatgaaaaaattaattaatatggtatcttgaacatagctgttatgtgtcataatg |
411 |
Q |
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| T |
7282114 |
gttgatgaacaaattaat--atttggtatcttcgacatatctgttatgcgttataatg |
7282169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 7281246 - 7281347
Alignment:
| Q |
25 |
tacacgcacactcataagtgcaaatgtgcctttatatccaagtgttgattttaatttcttggttcaatctttcttccgatagaagaagcaattcgaagat |
124 |
Q |
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| T |
7281246 |
tacacgcacac--ataagtgcaaatgtgcctttatatccaaatgttgattttaatttcttggttcaatctttcttccaacagaagaagcaattcgaagat |
7281343 |
T |
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| Q |
125 |
ctaa |
128 |
Q |
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|||| |
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| T |
7281344 |
ctaa |
7281347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 211 - 419
Target Start/End: Complemental strand, 1697281 - 1697075
Alignment:
| Q |
211 |
cttattgtttttctgctgtttcagagagtattcacggcaagaatacttgaagaaaagagaggaaaataaattagaagaactgaggtatggttctacttcc |
310 |
Q |
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| T |
1697281 |
cttattgtttttctgctgtttcagaaagtattcacgacaagaatacttgaagaaaagagaggaaaagaaattagaagaactgaggtatgattctacttcc |
1697182 |
T |
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| Q |
311 |
gtttcatttattttcttaaggttgtttccagttctgattttctgtcgatgaaaaaattaattaatatggtatcttgaacatagctgttatgtgtcataat |
410 |
Q |
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| T |
1697181 |
gtttcatttattttcttatggttgtttttagttctgattttctgtcaatgaagaaattaat--atttgatatcttggacatatctgttatgtattataat |
1697084 |
T |
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| Q |
411 |
gcttatttt |
419 |
Q |
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| T |
1697083 |
gcttatttt |
1697075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 1697965 - 1697867
Alignment:
| Q |
30 |
gcacactcataagtgcaaatgtgcctttatatccaagtgttgattttaatttcttggttcaatctttcttccgatagaagaagcaattcgaagatctaa |
128 |
Q |
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| T |
1697965 |
gcacacacataagtgcaaacgtgccttcatatccaaatattgattttaatttcttggttcaatttttcttccaacagacgaagcaattcgaagatctaa |
1697867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 39710393 - 39710500
Alignment:
| Q |
17 |
agcttacatacacgcacactcataagtgcaaatgtgcctttatatccaagtgttgattttaatttcttggttcaatctttcttccgatagaagaagcaat |
116 |
Q |
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| T |
39710393 |
agcttacatagatgcacacactgaagtgcaaatgtacctttatatccaagtgttgattttaatttcttggttcaatctttcttccaacagaagaagcaat |
39710492 |
T |
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| Q |
117 |
tcgaagat |
124 |
Q |
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| T |
39710493 |
tcgaagat |
39710500 |
T |
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