View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17766_low_5 (Length: 276)
Name: NF17766_low_5
Description: NF17766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17766_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 34718272 - 34718010
Alignment:
| Q |
1 |
taattgtaaccgttatgttaattaggattataaattgcagaattaataaatgacagttgatgatttatgggctcaacatcaaccctagcttgtaattaag |
100 |
Q |
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| T |
34718272 |
taattgtaaccgttatgttaattaggattataaattgcagaattaataaatgacagttgatgatttatgggctcaacatcaaccctagcttgtaattaag |
34718173 |
T |
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| Q |
101 |
ttgtatttatatgagaattc-ttttattttttgagtactttatatattaactctcatttatatgagaattctcctagaataaaaaacacaatttctagcc |
199 |
Q |
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| T |
34718172 |
ttgtatttatatgagaattctttttattttttgagtactttatatattaactctcatttatatgagaattctcctagaataaaaaacacaatttctagcc |
34718073 |
T |
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| Q |
200 |
taagcttctctgagttt--gactgacacaattatcattttaccactaaaaactcctcctcttc |
260 |
Q |
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| T |
34718072 |
taagcttctctgagttttatactgacacaattatcatcttaccactaaaaactcctcctcttc |
34718010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 18938589 - 18938657
Alignment:
| Q |
184 |
aacacaatttctagcctaagcttctctgagtttgactgacacaattatcattttaccactaaaaactcctcct |
256 |
Q |
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| T |
18938589 |
aacacactttctagcctaagcttctctgagtt----tgacacaattatcatttttccacttaaaacccctcct |
18938657 |
T |
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