View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17766_low_7 (Length: 247)
Name: NF17766_low_7
Description: NF17766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17766_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 46685364 - 46685128
Alignment:
| Q |
1 |
aaacttgatagctttggtgcat--gtttggatgagcgatgagattgataaaaagcacagtgagccagtcacaaattttccacaaaagctacactttgtag |
98 |
Q |
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| T |
46685364 |
aaacttgatagctttggtgcatatgtttggatgagcgatgagattgataaaaagca--gtgagccagtcacaaattttccacaaaagctacactttgtag |
46685267 |
T |
|
| Q |
99 |
ctttgcaaaatcacggtggctcactagatttttcaatctcgttgctcatctaaacatgcatttactcccataaaatcatgtgtatattttgtttcctttt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46685266 |
ctttgcaaaatcacggtggctcactagatttttcaatctcgttgctcatcttaacatgcatttactcccataaaatcatgtatatattttgtttcctttt |
46685167 |
T |
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| Q |
199 |
tgtgtagtttatgaccgtaaatgttgtttccttgatcct |
237 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
46685166 |
tgtgtagtttatgaccgtaaatgttgtttctttgatcct |
46685128 |
T |
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