View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17766_low_9 (Length: 217)
Name: NF17766_low_9
Description: NF17766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17766_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 34320516 - 34320310
Alignment:
| Q |
1 |
tcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattc |
100 |
Q |
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| T |
34320516 |
tcttgtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattc |
34320417 |
T |
|
| Q |
101 |
ctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaatatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34320416 |
ctccacatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaatttgtcgggaaacaaagggttcaatatttt |
34320317 |
T |
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| Q |
201 |
atctgtg |
207 |
Q |
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||||||| |
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| T |
34320316 |
atctgtg |
34320310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 34329420 - 34329231
Alignment:
| Q |
5 |
gtaatttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctcc |
104 |
Q |
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|||| |||| |||||| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34329420 |
gtaaattttcgttgataatggaccaatcattcatgaagttgaaaagtgtcgaaccatcaccaattttgtgactcatgcaaacacttatcgccattcctcc |
34329321 |
T |
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| Q |
105 |
acatgcgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaa |
194 |
Q |
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| T |
34329320 |
acatgcaaaacagttgatttgaatggctattaaagtttcactccaatccatttctttccattgcaattcatccgggaacaaagggttcaa |
34329231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 36633111 - 36633294
Alignment:
| Q |
11 |
tttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatgc |
110 |
Q |
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|||||||||| ||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36633111 |
tttggttgatagtggcccaatcattcatgaagttgaaaacggttgaagcatcaccaattttgtgactcatgcaaatacttatagccattcctccacatgc |
36633210 |
T |
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| Q |
111 |
gaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaa |
194 |
Q |
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| T |
36633211 |
aaagcagtttatttgaatggctataaaacttgcactccaatccatgtctttccattgtaattcatcagggaacaaagggttcaa |
36633294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 36627543 - 36627727
Alignment:
| Q |
10 |
ttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatg |
109 |
Q |
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||||||||||| |||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
36627543 |
ttttggttgataatggcccaatcattcatgaatttgaaaatggttgaagcatcaccaattttgtgagtcatgcaaatacttattaccattcctccacatg |
36627642 |
T |
|
| Q |
110 |
cgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggttcaa |
194 |
Q |
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| T |
36627643 |
taaaccaatttatttgaatggctataaaacttgctctccaatccatttctttccattgtaattcatcagggaacaaagggttcaa |
36627727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 36622306 - 36622487
Alignment:
| Q |
10 |
ttttggttgatgatggaccaatcattcatgaagttgaaaatggttgacgcatcaccaattttgtgactcatgcaaatacttatcgccattcctccacatg |
109 |
Q |
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||||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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| T |
36622306 |
ttttggtagataatggcccaatcattcatgaagttgaaaatggttgcagcatcaccaattttgtgactaatgcaaatacttattaccattcctccgcatg |
36622405 |
T |
|
| Q |
110 |
cgaaacagttgatttgaacagctatcaaagtatcgctccaatccatgtctttccattgcaattcgtcgggaaacaaagggtt |
191 |
Q |
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| T |
36622406 |
caaaccaatttacttgaatggctataaaactcgctctccaatccatttctttccattgtaattcatcagggaacaaagggtt |
36622487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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