View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17767_high_3 (Length: 379)
Name: NF17767_high_3
Description: NF17767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17767_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 4320332 - 4320129
Alignment:
| Q |
17 |
taatctacgaaatttaatgataattataagactatgactttaattaataatgaaagtgttgggtggttttgattttgaaattgacattgataagttatgt |
116 |
Q |
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| T |
4320332 |
taatctactaaatgtaatgataattataagactatgactttaattaataatgaaagtgttgggtggttttga------aattgacattgataagttatgt |
4320239 |
T |
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| Q |
117 |
atgttttcttgatgaccaagatccaagtagttgaaagaacgagttttagtacgaactcgtcaatggattcaaaacaaaaataaaatactttttgcgttct |
216 |
Q |
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| T |
4320238 |
atgttttcttgatgaccaagatccaagtagttgaaagaacgagttttagtacgaactcgtcaatggattcaaaacaaaaataaaatactttttgcgttct |
4320139 |
T |
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| Q |
217 |
gatgaaatga |
226 |
Q |
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|||||||||| |
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| T |
4320138 |
gatgaaatga |
4320129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 259 - 367
Target Start/End: Complemental strand, 4320123 - 4320015
Alignment:
| Q |
259 |
tccacgaaattcattcataagttgcgttggagtttgctggttgtttatttacaccaacggtcgcgattcactttcccatctatttggaccgctatgataa |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4320123 |
tccacgaaattcattcataagttgcgttggagtttgctggttgtttatttacaccaacggtcacgattcactttcccatctatttggaccgctatgataa |
4320024 |
T |
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| Q |
359 |
cacgagtat |
367 |
Q |
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| T |
4320023 |
cacgagtat |
4320015 |
T |
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