View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17767_low_1 (Length: 496)
Name: NF17767_low_1
Description: NF17767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17767_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Original strand, 26408103 - 26408580
Alignment:
| Q |
19 |
ttactagtttgagcggcattgtcatatgttagtcgctaagtgtttgattatatttcatcctatattatgattactttgttaaataaattgagttaatttt |
118 |
Q |
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| T |
26408103 |
ttactagtttgagcggcattgtcatatgttagtcgttaagtgtttgattatatttcatcctatattatgattactttgataaataaattgagttaatttt |
26408202 |
T |
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| Q |
119 |
gtgaccatnnnnnnngtattttatccctcttctgtcaacaaaaaagtattttattcctctcgcatgcaacaaccgtttcctgatatagaaataaaaccaa |
218 |
Q |
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| T |
26408203 |
gtgacca-gaaaaaagtattttattcctcttatatcaacaaaaaagtattttattcctcttgcatgcaacaaccgtttcctgatatagaaataaaaacaa |
26408301 |
T |
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| Q |
219 |
gttgttgtgtgaaaagnnnnnnngaaatggatgtaacataattaaccgatgcagtattttattcctctcgaatgtaacaaccctcttttgttcttaatag |
318 |
Q |
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| T |
26408302 |
gttgttgtgtgaaaagaaaaaaagaaatggatgtaacataattaaccgatgcagtattttattcctctcgaatgtaacaaccctcttttgttcttaatag |
26408401 |
T |
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| Q |
319 |
aaat-nnnnnnnnnnnnnnngatgcttcttggtgaattcgtttactttggtttataagcgagcaactagtataaatagagcctcattatctgaatgtgta |
417 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
26408402 |
aaataaaaaaataaaaaaaagatgcttctttgtgaattcgtttactttggtttataagctagcaactagtataaatagagcctcattttctgaatgtgta |
26408501 |
T |
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| Q |
418 |
ctcaccaaaccttaaaccttcatccattatattttctaagctatggattacagtgcctttgcctttttccggtcatatt |
496 |
Q |
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| T |
26408502 |
ctcaccaaaccttaaaccttcatccattatattttctaagctatggattacagtgcctttgcctttttccggtcatatt |
26408580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 52010960 - 52011042
Alignment:
| Q |
15 |
tcacttactagtttgagcggcattgtcatatgttagtcgctaagtgtttgattatatttcatcctatattatgattactttgt |
97 |
Q |
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| T |
52010960 |
tcacttactagctcgagcggcattatcatatcctagtcgttaagtatttgattatattttatcctgtattataactactttgt |
52011042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 763110 - 763006
Alignment:
| Q |
17 |
acttactagtttgagcggcattgtcatatgttagtcgctaagtgtttgattatatttcatcctatattatgattactttgttaaataaattgagttaatt |
116 |
Q |
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| T |
763110 |
acttactagctcgagggacattgtcatatgctagttgctaagtgtttgattatattttgtcatgtattttgaccactttgataaatgaaatgagttattt |
763011 |
T |
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| Q |
117 |
ttgtg |
121 |
Q |
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| T |
763010 |
ttgtg |
763006 |
T |
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