View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17767_low_12 (Length: 213)
Name: NF17767_low_12
Description: NF17767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17767_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 2e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 40093322 - 40093190
Alignment:
| Q |
8 |
gctccatagttctgatgtgtatatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaac |
107 |
Q |
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| T |
40093322 |
gctccatagttctgatgtgtatatggttcatgttagatatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaactaaaaac |
40093223 |
T |
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| Q |
108 |
aagaaaagctgaacctgaagtccaactgttaaa |
140 |
Q |
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| T |
40093222 |
aagaaaagctgaacctgaagtccaactgttaaa |
40093190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 40062670 - 40062535
Alignment:
| Q |
8 |
gctccatagttctgatgtgtatatggttcatgttag-----atatagtaatgagagaaatcattgggggagcaagcaattctatgcataattggaaacta |
102 |
Q |
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| T |
40062670 |
gctccatagttctgatgtgcatatggttcatgttagcttagatatagtaatgagagaaatctttggaggagcaagccattctatgcataattggaaacta |
40062571 |
T |
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| Q |
103 |
aaaacaagaaaagctgaacctgaagtccaactgtta |
138 |
Q |
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| T |
40062570 |
caaacacgaaaatctgaacctgaagtccaactgtta |
40062535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 140
Target Start/End: Complemental strand, 40080912 - 40080857
Alignment:
| Q |
85 |
atgcataattggaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaa |
140 |
Q |
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| T |
40080912 |
atgcatatttagaaactaaaaacaagaaaagctgaacctgaagtccaactgttaaa |
40080857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Complemental strand, 40081019 - 40080933
Alignment:
| Q |
8 |
gctccatagttctgatgtgtatatggttcat-----gttagatatagtaatgagagaaatcattgggggagcaagcaattctatgca |
89 |
Q |
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| T |
40081019 |
gctccatagttctgatgtgtatatggttcatattagcttagatatagtaatgagagaaatcactgaaggagcaagccagtctatgca |
40080933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 5051938 - 5052006
Alignment:
| Q |
129 |
ccaactgttaaattatgtattattgctgacttgattgatcccggccccaatcacgaggagaagattgag |
197 |
Q |
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| T |
5051938 |
ccaactgtcaaattatgtattgttgctgacttgattgatcccggccccgatcacgaggagaagattgag |
5052006 |
T |
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