View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17767_low_5 (Length: 366)
Name: NF17767_low_5
Description: NF17767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17767_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 2812014 - 2811666
Alignment:
| Q |
1 |
atattgtgatactaaaagtgagtttgtgtaccttttgttccctcccaatattgagcacaatcatttcaataagacctttggtgttcataagtaaaccaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2812014 |
atattgtgatactaaaagtgagtttgtgtaccttttgttccctcccaatattgagcacaatcatttcaataagacctttggtgttcataagtaaaccaag |
2811915 |
T |
|
| Q |
101 |
aacaataccatcgcgagctggtaagtcgaaaaggattgatacaataacagtcccgacgatcttgcccaaacaagcgaaaggaacgattgtcaatacaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2811914 |
aacaataccatcgcgagctggtaagtcgaaaaggattgatacaataacagtcccgatgatcttgcccaaacaagttaaaggaacgattgtcaatacaaat |
2811815 |
T |
|
| Q |
201 |
gcccacgaaccacctttattgaataagttaatattagtcttaagtccactaatagcataaaaaagagggagtaaaagccccgaaacaaagtcttctagct |
300 |
Q |
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| T |
2811814 |
gcccacgaaccacctttattgaataagttaatattagtcttaagtccactaatagcataaaaaagagggagtaaaagccccgaaacaaagtcttctagct |
2811715 |
T |
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| Q |
301 |
tttcaattattgcagctccaagtggtccatttggaatcactaatccata |
349 |
Q |
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| T |
2811714 |
tttcaattattgcagctccaagtggtccatttggaatcactaatccata |
2811666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 44055517 - 44055587
Alignment:
| Q |
30 |
accttttgttccctcccaatattgagcacaatcatttcaataagacctttggtgttcataagtaaaccaag |
100 |
Q |
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| T |
44055517 |
accttttggtcctttccaacattgagcacaatcatttcaactagtcctttagtgttcatgagtaagccaag |
44055587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 337
Target Start/End: Original strand, 39237595 - 39237696
Alignment:
| Q |
236 |
agtcttaagtccactaatagcataaaaaagagggagtaaaagccccgaaacaaagtcttctagcttttcaattattgcagctccaagtggtccatttgga |
335 |
Q |
| |
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|||||| || |||||||| ||| |||| ||||| || ||||| || ||||||||||| || ||||||||||| | ||| |||||||||||| ||||| |
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| T |
39237595 |
agtctttaggccactaattgcaaaaaagagaggaagcaaaagtccagaaacaaagtcctcaagcttttcaataagagcaaaaccaagtggtccagttgga |
39237694 |
T |
|
| Q |
336 |
at |
337 |
Q |
| |
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|| |
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|
| T |
39237695 |
at |
39237696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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