View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17767_low_6 (Length: 356)
Name: NF17767_low_6
Description: NF17767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17767_low_6 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 16713 - 16366
Alignment:
| Q |
1 |
aacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattg |
100 |
Q |
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| T |
16713 |
aacataactgcaattggaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcaacaataacaattg |
16614 |
T |
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| Q |
101 |
ttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagttttgaaaataa |
200 |
Q |
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| T |
16613 |
ttatatgctcagtcccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcaactttgaaaataa |
16514 |
T |
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| Q |
201 |
agggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataagaagtaataacaattggaattgaatagga |
300 |
Q |
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| T |
16513 |
agggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataataagtaataacaattggaattgaatagga |
16414 |
T |
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| Q |
301 |
aagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
348 |
Q |
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| T |
16413 |
aagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
16366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 11177271 - 11177600
Alignment:
| Q |
1 |
aacataactgcaattggaatcgaacaccaaacaccaaacaatagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattg |
100 |
Q |
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| T |
11177271 |
aacataactgcaattgaaatcgaacaccaaacaccaaacagtagcgcaaacaatgaaaatatatggattatatggcacacgtactcagcaataacaattg |
11177370 |
T |
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| Q |
101 |
ttatatgctcagccccgcaacaatggaacagccaacaacaacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagttttgaaaataa |
200 |
Q |
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| T |
11177371 |
ttatatactcagcccagcaac------------------aacaattcaatttaattaaataaaagaaagaaaagggacgtagcagcagctttgaaaataa |
11177452 |
T |
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| Q |
201 |
agggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataagaagtaataacaattggaattgaatagga |
300 |
Q |
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| T |
11177453 |
agggaatttggattggtaagtgctgcaaaataaaatcgggttgagtaataatgtgcagcgatataatataataagtaataacaattggaattgagtaaga |
11177552 |
T |
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| Q |
301 |
aagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
348 |
Q |
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| T |
11177553 |
aagtaataagaaattggattgctgaacgaaaatagaacacaggttctg |
11177600 |
T |
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