View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17767_low_8 (Length: 334)
Name: NF17767_low_8
Description: NF17767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17767_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 331
Target Start/End: Complemental strand, 5957987 - 5957666
Alignment:
| Q |
10 |
catcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5957987 |
catcatcatcaaacttcaccttcatataactacacccagtccgaaaccccgaatcaaacttcacccctctagtctgcaccttctccttattcatccccaa |
5957888 |
T |
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| Q |
110 |
aacaatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggtggccca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5957887 |
aacaatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccacattcgacggcggccca |
5957788 |
T |
|
| Q |
210 |
ccaggtgctcgcgcaaactccggcggcttccattgtaacatcttccattcggtgtatatatctgggtccattggaaactcgtgcacacgcaccgtaggta |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5957787 |
ccaggtgctcgcgcaaactccggcggcttccattgtaacatcttccattctgtgtatatatctgggtccattggaaactcctgcacacgcaccgtaggta |
5957688 |
T |
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| Q |
310 |
gaaactccctctgtgttgctcc |
331 |
Q |
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||||||||||||||| |||||| |
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| T |
5957687 |
gaaactccctctgtgctgctcc |
5957666 |
T |
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