View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17768_high_1 (Length: 846)
Name: NF17768_high_1
Description: NF17768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17768_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 6 - 826
Target Start/End: Original strand, 6169765 - 6170581
Alignment:
| Q |
6 |
gaggagaagcataggaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctg |
105 |
Q |
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||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6169765 |
gaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctg |
6169864 |
T |
|
| Q |
106 |
caatgtcaatagcctcatttgtcccgttggtgttttcaaatcgaccaacgtaacgtgtacactttcatccattcgtcgacaacttttgttccaaaaaagg |
205 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6169865 |
caatgtcaatagcttcatttgtcccgttggtgttttcaaatcgaccaatgtaacgtgtacactttcatgcattcgtcgacaacttttgttccaaaaaagg |
6169964 |
T |
|
| Q |
206 |
atgagggtttctactactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatc |
305 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6169965 |
atgagggtttctacta---atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatc |
6170061 |
T |
|
| Q |
306 |
aatacttgatcaccaatattcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaa |
405 |
Q |
| |
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| T |
6170062 |
aatacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttggcagttaccacttcgaacttaatcattttga- |
6170160 |
T |
|
| Q |
406 |
taacattgctaattgaaacaatttatcaaattgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgttta |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170161 |
taacattgctaattgaaacaatttatcaaattgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgttta |
6170260 |
T |
|
| Q |
506 |
taatcaaggacaaagggagtaattatcnnnnnnncttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaatta |
605 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170261 |
taatcaaggacaaagggagtaattatctttttttcttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaatta |
6170360 |
T |
|
| Q |
606 |
atttatgagatatagaattggttccaggatgacataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagct |
705 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6170361 |
atttatgagatatagaattggttccaggatgacataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagcc |
6170460 |
T |
|
| Q |
706 |
tatgtttgtattgttatttgatagtggatttgttgtgtcctacaatttgtagcttctctattatcaatttccaaagctatcaaacgtgtggtgaaacgcc |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
6170461 |
tatgtttgtattgttatttgatagtggatttgttgtgtcctacaatttgtagcttctctattatcaatttccaaagctatcaaacatgtggtgaaacgcc |
6170560 |
T |
|
| Q |
806 |
aaaacaaacacaaacttagtt |
826 |
Q |
| |
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||||||||||||||||||||| |
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| T |
6170561 |
aaaacaaacacaaacttagtt |
6170581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 225 - 439
Target Start/End: Original strand, 6186927 - 6187142
Alignment:
| Q |
225 |
atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaatat |
324 |
Q |
| |
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|||||||||||||||||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||| ||| | ||||||||||||||| | |
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| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
|
| Q |
325 |
tcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgctaa-ttgaaa |
423 |
Q |
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| T |
6187027 |
tcaaacaaacaacatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgaga |
6187126 |
T |
|
| Q |
424 |
caatttatcaaattgt |
439 |
Q |
| |
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|||||||||||||||| |
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| T |
6187127 |
caatttatcaaattgt |
6187142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 439
Target Start/End: Original strand, 4243869 - 4244086
Alignment:
| Q |
223 |
taatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaat |
322 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||| ||| ||||||||||||||| |
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| T |
4243869 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaat |
4243968 |
T |
|
| Q |
323 |
attcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgct-aattga |
421 |
Q |
| |
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||| ||||||||||||||||||| || || || |||| |||||| ||| ||||| ||||| ||||| |||||||| ||||||| | |||| |
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| T |
4243969 |
cttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttga |
4244068 |
T |
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| Q |
422 |
aacaatttatcaaattgt |
439 |
Q |
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||||||||||||||||| |
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| T |
4244069 |
gacaatttatcaaattgt |
4244086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 746 - 790
Target Start/End: Original strand, 47336509 - 47336553
Alignment:
| Q |
746 |
tacaatttgtagcttctctattatcaatttccaaagctatcaaac |
790 |
Q |
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| T |
47336509 |
tacaatttgtagcttctctattatcaatttccaaggctctcaaac |
47336553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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