View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17768_high_4 (Length: 389)
Name: NF17768_high_4
Description: NF17768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17768_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 3069252 - 3069609
Alignment:
| Q |
10 |
aagaaaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgcaacatgatttaa |
109 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3069252 |
aagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacattcaacatgatttaa |
3069351 |
T |
|
| Q |
110 |
attagtaccatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatggact |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3069352 |
attagtaccatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatggact |
3069451 |
T |
|
| Q |
210 |
aaaattagcatttggatttacttgcacagttgatgtaaaagattcaattttcattttgaaattggccatctaatctttnnnnnnnnnnnnnnnnnncaac |
309 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3069452 |
aaaattagcatttggatttacttgcacagatgatgtaaaagattcaattttcattttgaaattggccatctaatctttagagagagagagagagagcaac |
3069551 |
T |
|
| Q |
310 |
tatgtagatatagatattagatatagaaactacagtcgcacccatatacacgggtaca |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3069552 |
tatgtagatatagatattagatatagaaactacagtcgcacccatatacacgggtaca |
3069609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 10 - 275
Target Start/End: Original strand, 3067049 - 3067308
Alignment:
| Q |
10 |
aagaaaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgcaacatgatttaa |
109 |
Q |
| |
|
|||| |||| |||| |||||||||||| ||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3067049 |
aagagaataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgtcaac-------atgatttaa |
3067141 |
T |
|
| Q |
110 |
attagtaccatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagcagatgcacaataataaaatttgattcatatggact |
209 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| |||||| ||| |
|
|
| T |
3067142 |
attagtaccatttggggtaagcgaagcacaacttgatcactcaatgtgcttgaagaaagtgaagcaaatatacaatgataaaatttgatccatatgcact |
3067241 |
T |
|
| Q |
210 |
aaaattagcatttggatttacttgcacagt-tgatgtaaaagattcaattttcattttgaaattggc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3067242 |
aaaattagcatttggatttacttgcacagtatgatgtaaaagattcaattttcattttgaagttggc |
3067308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 97 - 287
Target Start/End: Original strand, 3047733 - 3047927
Alignment:
| Q |
97 |
caacatgatttaaattagta--ccatttggggtaagtgaagcacaacttgatcac--tcaatgtaattgaagaaagtgaagcagatgcacaataataaaa |
192 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||| ||||| | ||||||| ||| ||||||| ||||||||||||||| | |||| ||||||| | |
|
|
| T |
3047733 |
caacatgatttaaattagtataccatttgga-taactgaagaaaaacttgaccacactcaatgtgattgaagaaagtgaatcgcgggcacgataataaca |
3047831 |
T |
|
| Q |
193 |
tttgattcatatggactaaaattagcatttggatttacttgcacagt-tgatgtaaaagattcaattttcattttgaaattggccatctaatcttt |
287 |
Q |
| |
|
|||| || || | ||||||||| || |||||||||| || ||| | ||||||||||| |||| ||||||||||||||||| | || |||||||| |
|
|
| T |
3047832 |
tttgcatcctaagtactaaaatttccaattggatttacatgtacaatatgatgtaaaagtttcagttttcattttgaaattgacaatgtaatcttt |
3047927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 32304853 - 32304911
Alignment:
| Q |
116 |
accatttggggtaagtgaagcacaacttgatcactcaatgtaattgaagaaagtgaagc |
174 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||||| | |||||||||| |||||| |
|
|
| T |
32304853 |
accatttgtggtaagtgaagcacaacttgaccactcaagatgattgaagaaattgaagc |
32304911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University