View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17768_low_11 (Length: 256)
Name: NF17768_low_11
Description: NF17768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17768_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 29464352 - 29464123
Alignment:
| Q |
18 |
gtattttggtttatttgagtttttctttgaatcttgtgtcgcaaaatgtacagatataatgggtactttgagatgactt------gttgcttgaagttat |
111 |
Q |
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| T |
29464352 |
gtattttggtttatttgagtttttctttgaatcttgtgtcgcaaaatgtacagatataatgggtactttgagatgacttatacttgttgcttgaagttat |
29464253 |
T |
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| Q |
112 |
tccaatgatctaatctatcttctaaaagatcgtctaaaagtgcttgcaagtgtatttataaagattatggccaaaatgtgcgagtttattttatctagtt |
211 |
Q |
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| T |
29464252 |
tccaatgatctaatctatcttctaaaagatcgtctaaaagtgcttgcaagtgtatttataaagattatggccaaaatgtgagagtttattttatctagtt |
29464153 |
T |
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| Q |
212 |
tgatttatctttgacttaatctagtttgat |
241 |
Q |
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| T |
29464152 |
tgatttatctttgacttaatctagtttgat |
29464123 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 8674747 - 8674819
Alignment:
| Q |
131 |
ttctaaaagatcgtctaaaagtgcttgcaagtgtatttataaagattatggccaaaatgtgcgagtttatttt |
203 |
Q |
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| T |
8674747 |
ttctgaaagatcatcaaaaaaagcttgcaaatttatttataaacattatagccaaaatgtgctagtttatttt |
8674819 |
T |
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