View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17768_low_3 (Length: 401)
Name: NF17768_low_3
Description: NF17768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17768_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 31702582 - 31702957
Alignment:
| Q |
18 |
gattcctttagtgaacttgcttatgatttgtcacactttttcaccagtcagcaaaacattgatgaagggaatggagtactgaatatgatcattgaaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31702582 |
gattcctttagtgaacttgcttatgatttgtcacactttttcaccagtcagcaaaacattgatgaagggaatggagtactgaatatgatcattgaaaagg |
31702681 |
T |
|
| Q |
118 |
tttttgattttgttaacttaataaataagtaattatgtagaccaattgaattgagtatgaatggtttgttaatagggttagtgaatgtttatgcagaatg |
217 |
Q |
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| T |
31702682 |
tttttgattttgttaacttaataaataagtaatcatgtagaccaattgaattgagtatgaatggtttgttaatagggttagtgaatgtttatgcagaatg |
31702781 |
T |
|
| Q |
218 |
tagatggaagggaatcaatatgtaatgcatgcttaccttgctgttactctggctcgccgccgcacagaacagagaatccattggttcatgatgttgagtt |
317 |
Q |
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| T |
31702782 |
tagatggaagggaatcaatatgtaatgcatgcctaccttgctgttactctggctcgccgccgcgcagaactgagaatcctttggttcatgatgttgagtt |
31702881 |
T |
|
| Q |
318 |
tcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacctatgct |
393 |
Q |
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| T |
31702882 |
tcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacctctgct |
31702957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 31736943 - 31737314
Alignment:
| Q |
18 |
gattcctttagtgaacttgcttatgatttgtcacactttttcaccagtcagcaaaacattgatgaagggaatggagtactgaatatgatcattgaaaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31736943 |
gattcctttagtgaacttgcttatgatttgtcacactttttcaccagtcagcaaaacattgatgaagggaatggagtactgaatatgatcattgaaaagg |
31737042 |
T |
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| Q |
118 |
tttttgattttgttaacttaataaataagtaattatgtagaccaattgaattgagtatgaatggtttgttaatagggttagtgaatgtttatgcagaatg |
217 |
Q |
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|||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||| ||||| || ||||| ||||||||||||||||||| |
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| T |
31737043 |
tttttgattttgttaacttaataaataacta----tggagacgaattgaattgagtatgaatggcttgttgattgggttgatgaatgtttatgcagaatg |
31737138 |
T |
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| Q |
218 |
tagatggaagggaatcaatatgtaatgcatgcttaccttgctgttactctggctcgccgccgcacagaacagagaatccattggttcatgatgttgagtt |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |
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| T |
31737139 |
tagatggaagggaatcaatatgtaatggatgcttaccttgttgttactctggctcgccgccgcgcagaactgagaatcctttggttcatgatgttgagtt |
31737238 |
T |
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| Q |
318 |
tcttcatcaaatggaagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacctatgct |
393 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31737239 |
tcttcatcaaatggcagttgtttcaccattattatcacgaactaaatactctgataaatttggtatcacctctgct |
31737314 |
T |
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