View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17768_low_6 (Length: 372)
Name: NF17768_low_6
Description: NF17768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17768_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 6 - 356
Target Start/End: Original strand, 6169765 - 6170112
Alignment:
| Q |
6 |
gaggagaagcataggaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctg |
105 |
Q |
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| T |
6169765 |
gaggataaacatagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctg |
6169864 |
T |
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| Q |
106 |
caatgtcaatagcctcatttgtcccgttggtgttttcaaatcgaccaacgtaacgtgtacactttcatccattcgtcgacaacttttgttccaaaaaagg |
205 |
Q |
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| T |
6169865 |
caatgtcaatagcttcatttgtcccgttggtgttttcaaatcgaccaatgtaacgtgtacactttcatgcattcgtcgacaacttttgttccaaaaaagg |
6169964 |
T |
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| Q |
206 |
atgagggtttctactactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatc |
305 |
Q |
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| T |
6169965 |
atgagggttt---ctactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatc |
6170061 |
T |
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| Q |
306 |
aatacttgatcaccaatattcnnnnnnncaacatcaccaacaacaatctca |
356 |
Q |
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| T |
6170062 |
aatacttgatcaccaatattcaaaaaaacaacatcaccaacaacaatctca |
6170112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 225 - 352
Target Start/End: Original strand, 6186927 - 6187054
Alignment:
| Q |
225 |
atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaatat |
324 |
Q |
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| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
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| Q |
325 |
tcnnnnnnncaacatcaccaacaacaat |
352 |
Q |
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| T |
6187027 |
tcaaacaaacaacatcaccaacaacaat |
6187054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 4243869 - 4243932
Alignment:
| Q |
223 |
taatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatc |
286 |
Q |
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| T |
4243869 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatc |
4243932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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