View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17768_low_8 (Length: 294)
Name: NF17768_low_8
Description: NF17768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17768_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 278
Target Start/End: Original strand, 48900143 - 48900400
Alignment:
| Q |
21 |
ctcattgaatatgacgatgacagaatgaaaaataaaatcatttcagtgattcactctatgaaatgagagtttcacaaactaaccttgacaaacagcaaaa |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48900143 |
ctcattgaatatgatgatgacagaatgaaaaataaaatcatttcagtgattcactctatgaaatgagagtttcacaaactaaccttgacaaacagcaaaa |
48900242 |
T |
|
| Q |
121 |
ttaactgtaactaacagaggatagcaaaacatagaatcatgtgtgtaataaaaatttcaagaattggattattttacacgaactatattatttgagataa |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48900243 |
ttaactgtaactaacagaggatagcaaaacatagaatcatgtgtgtaataaaaatttcaagaattggattattttacacgaactatattatttgagataa |
48900342 |
T |
|
| Q |
221 |
ttatacaggcttaggtttagcttacacagtaatcaagcatatgcagaagcaaacaatt |
278 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48900343 |
ttatacaggcttaggtttagcttacacagtaatcaagaatatgcagaagcaaacaatt |
48900400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 11232249 - 11232196
Alignment:
| Q |
225 |
acaggcttaggtttagcttacacagtaatcaagcatatgcagaagcaaacaatt |
278 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11232249 |
acaggcttgggtttagttcacacagtaatcaatcatatgcagaagcaaacaatt |
11232196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University