View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17769_high_3 (Length: 227)

Name: NF17769_high_3
Description: NF17769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17769_high_3
NF17769_high_3
[»] chr1 (4 HSPs)
chr1 (119-227)||(32451372-32451480)
chr1 (55-143)||(35306980-35307069)
chr1 (56-131)||(14579294-14579370)
chr1 (56-120)||(22387847-22387911)
[»] chr5 (2 HSPs)
chr5 (43-130)||(932483-932571)
chr5 (66-130)||(27499493-27499557)
[»] chr2 (4 HSPs)
chr2 (22-131)||(931111-931221)
chr2 (21-131)||(5187744-5187855)
chr2 (55-131)||(1130602-1130679)
chr2 (57-111)||(7401379-7401434)
[»] chr8 (2 HSPs)
chr8 (43-97)||(40112832-40112887)
chr8 (55-97)||(10840022-10840064)
[»] chr4 (2 HSPs)
chr4 (55-120)||(48546769-48546835)
chr4 (43-130)||(24195107-24195195)
[»] chr3 (4 HSPs)
chr3 (66-112)||(22223609-22223655)
chr3 (43-90)||(7579550-7579598)
chr3 (66-130)||(16194078-16194142)
chr3 (20-99)||(33282881-33282961)
[»] chr6 (1 HSPs)
chr6 (57-114)||(10045733-10045790)
[»] chr7 (1 HSPs)
chr7 (43-90)||(19048525-19048573)


Alignment Details
Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 32451480 - 32451372
Alignment:
Q  119 aatgacctatttgctaaaacaaaaatattaaaaatatcttatacaaacatctatttaaaagacagcgaaaggtattttacctcttcttatggaaatggtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32451480 aatgacctatttgctaaaacaaaaatattaaaaatatcttatacaaacatctatttaaaagacagcgaaaggtattttacctcttcttatggaaatggtt 32451381  T
Q  219 cacttattt 227  Q
    |||||||||    
T  32451380 cacttattt 32451372  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 35307069 - 35306980
Alignment:
Q  55 cacataaacacttt-taattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaatgacctatttgctaaaacaaaaa 143  Q
    ||||||||||| || | |||||||||||||||| || | ||||||| || |||||||||||  ||||||||| ||||  || ||||||||    
T  35307069 cacataaacacattgtgattgagtttgatgaaattaggataatgatgcaaatattttatgacataaatgaccaatttattacaacaaaaa 35306980  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 14579294 - 14579370
Alignment:
Q  56 acataaacact-tttaattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaatgacctatttg 131  Q
    ||||||||||| ||| |||||||||||||||| || | ||||| | || ||||||||||| ||||| |||| |||||    
T  14579294 acataaacactctttgattgagtttgatgaaattaggataatggtgcaaatattttatgacttaaaagaccaatttg 14579370  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 22387847 - 22387911
Alignment:
Q  56 acataaacacttttaattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaa 120  Q
    ||||||||| |||||| ||||||||||| ||| || |||||  | || |||||||||||||||||    
T  22387847 acataaacatttttaactgagtttgatggaaagaaagtaattgtgcatatattttatgatttaaa 22387911  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 932571 - 932483
Alignment:
Q  43 acattaaacggtcacataaacactttt-aattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaatgacctattt 130  Q
    ||||||||||  |||||||||| |||| ||| |||||||||||||| ||| ||||||| || ||||||||||||||||| |||| ||||    
T  932571 acattaaacgcccacataaacaatttttaatcgagtttgatgaaaacaagataatgattcaaatattttatgatttaaaggaccaattt 932483  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 27499493 - 27499557
Alignment:
Q  66 ttttaattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaatgacctattt 130  Q
    |||||||||||||||||||||||||| || || |  | |||||||||||  ||||||||| ||||    
T  27499493 ttttaattgagtttgatgaaaataagatagtggtgtaaatattttatgacataaatgaccaattt 27499557  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 931221 - 931111
Alignment:
Q  22 gaatttggacctactggctttacattaaacggtcacataaacac-ttttaattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaa 120  Q
    ||||||| ||||||   ||| ||||||||||| ||||||||||| |||||| | |||||||||||| || | ||||||| || ||||||||||| |||||    
T  931221 gaatttgaacctaccaacttaacattaaacggccacataaacaccttttaactaagtttgatgaaagtatgataatgatgcatatattttatgacttaaa 931122  T
Q  121 tgacctatttg 131  Q
      |||||||||    
T  931121 atacctatttg 931111  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 5187855 - 5187744
Alignment:
Q  21 tgaatttggacctactggctttacattaaacggtcacataaacactttta-attgagtttgatgaaaataaggtaatgatacacatattttatgatttaa 119  Q
    |||||||||||| ||   ||| |||||||||  ||||||||||||||||  |||||||||||||||| ||   ||||| | || ||||||||||||||||    
T  5187855 tgaatttggaccaaccaacttaacattaaacattcacataaacactttttgattgagtttgatgaaattagaataatggtgcaaatattttatgatttaa 5187756  T
Q  120 atgacctatttg 131  Q
    | |||| |||||    
T  5187755 aggaccaatttg 5187744  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 1130679 - 1130602
Alignment:
Q  55 cacataaacactttt-aattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaatgacctatttg 131  Q
    ||||||||||||||| || |||||||||| |||||| | ||||||| || ||||||||||| ||||| |||| |||||    
T  1130679 cacataaacactttttaactgagtttgattaaaataggataatgatgcagatattttatgacttaaaagaccaatttg 1130602  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 7401379 - 7401434
Alignment:
Q  57 cataaacactttt-aattgagtttgatgaaaataaggtaatgatacacatatttta 111  Q
    ||||||||||||| ||||||||||||||||||||  |||||| |||| ||||||||    
T  7401379 cataaacactttttaattgagtttgatgaaaatattgtaatggtacatatatttta 7401434  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 97
Target Start/End: Original strand, 40112832 - 40112887
Alignment:
Q  43 acattaaacggtcacataaacactttt-aattgagtttgatgaaaataaggtaatg 97  Q
    |||||||||  ||| |||||||||||| |||||||||||||||||||||| |||||    
T  40112832 acattaaacattcatataaacactttttaattgagtttgatgaaaataagataatg 40112887  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 10840022 - 10840064
Alignment:
Q  55 cacataaacacttttaattgagtttgatgaaaataaggtaatg 97  Q
    |||||||||||||||||  |||||||||||||||||| |||||    
T  10840022 cacataaacacttttaaccgagtttgatgaaaataagataatg 10840064  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 48546835 - 48546769
Alignment:
Q  55 cacataaacactttt-aattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaa 120  Q
    ||||||||||||||| || | ||||||||||||||| | ||||| | || |||||||||||||||||    
T  48546835 cacataaacactttttaactaagtttgatgaaaataggataatggtgcaaatattttatgatttaaa 48546769  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 130
Target Start/End: Original strand, 24195107 - 24195195
Alignment:
Q  43 acattaaacggtcacataaacac-ttttaattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaatgacctattt 130  Q
    |||| ||||| |||||||||||| |||||| ||||||||| |||||||   ||||| | |  ||||||||||| |||||||||| ||||    
T  24195107 acatcaaacgttcacataaacactttttaactgagtttgaagaaaatataataatggtgccgatattttatgacttaaatgaccaattt 24195195  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 22223655 - 22223609
Alignment:
Q  66 ttttaattgagtttgatgaaaataaggtaatgatacacatattttat 112  Q
    ||||||||||||||||| |||||||| ||||||| || |||||||||    
T  22223655 ttttaattgagtttgattaaaataagataatgatgcatatattttat 22223609  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 90
Target Start/End: Original strand, 7579550 - 7579598
Alignment:
Q  43 acattaaacggtcacataaacac-ttttaattgagtttgatgaaaataa 90  Q
    ||||||||||   |||||||||| |||||||||||||||||||||||||    
T  7579550 acattaaacgtcaacataaacaccttttaattgagtttgatgaaaataa 7579598  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 16194142 - 16194078
Alignment:
Q  66 ttttaattgagtttgatgaaaataaggtaatgatacacatattttatgatttaaatgacctattt 130  Q
    |||| ||||| |||||||||| || | ||||||| || ||||||||||||||||| |||| ||||    
T  16194142 ttttgattgaatttgatgaaattaggataatgatgcaaatattttatgatttaaaggaccaattt 16194078  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 33282881 - 33282961
Alignment:
Q  20 gtgaatttggacctactggctttacattaaacggtcacataaacac-ttttaattgagtttgatgaaaataaggtaatgat 99  Q
    |||||||| |||||||   ||| ||||||||||  ||||||||||| |||||| |||||||||| |||||| | |||||||    
T  33282881 gtgaatttagacctaccaacttaacattaaacgtccacataaacactttttaactgagtttgattaaaatatgataatgat 33282961  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 10045790 - 10045733
Alignment:
Q  57 cataaacacttttaattgagtttgatgaaaataaggtaatgatacacatattttatga 114  Q
    ||||| ||||||||||| |  |||||||||||||||||||| | || |||||||||||    
T  10045790 cataagcacttttaatttaagttgatgaaaataaggtaatggtgcatatattttatga 10045733  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 19048573 - 19048525
Alignment:
Q  43 acattaaacggtcacataaacactttt-aattgagtttgatgaaaataa 90  Q
    ||||||||||   |||||||||||||| |||||||||||||||||||||    
T  19048573 acattaaacgtcgacataaacactttttaattgagtttgatgaaaataa 19048525  T

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