View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17769_low_1 (Length: 457)

Name: NF17769_low_1
Description: NF17769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17769_low_1
NF17769_low_1
[»] chr3 (1 HSPs)
chr3 (270-447)||(37602064-37602238)
[»] chr1 (1 HSPs)
chr1 (270-447)||(46558753-46558927)
[»] chr5 (1 HSPs)
chr5 (266-369)||(22778625-22778728)
[»] chr8 (1 HSPs)
chr8 (99-214)||(17931981-17932096)
[»] chr6 (1 HSPs)
chr6 (127-214)||(23602332-23602419)
[»] scaffold0838 (1 HSPs)
scaffold0838 (120-208)||(1818-1906)
[»] scaffold0832 (1 HSPs)
scaffold0832 (120-208)||(1849-1937)
[»] chr4 (2 HSPs)
chr4 (120-180)||(11012773-11012833)
chr4 (111-202)||(12189863-12189954)
[»] chr7 (1 HSPs)
chr7 (73-208)||(5760659-5760794)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 447
Target Start/End: Original strand, 37602064 - 37602238
Alignment:
Q  270 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 369  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  37602064 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 37602162  T
Q  370 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg 447  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  37602163 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg 37602238  T

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Target: chr1 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 270 - 447
Target Start/End: Complemental strand, 46558927 - 46558753
Alignment:
Q  270 ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca 369  Q
    ||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||     
T  46558927 ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatg-catcaaatccactactttacg 46558829  T
Q  370 atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatg 447  Q
     || ||||||||||||||  ||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||    
T  46558828 gtccaaatgtaacgtgtcatattggagctttt--tacaaatctgcaaattgtacttcaaatctaatgcatggcctatg 46558753  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 266 - 369
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
Q  266 cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact 364  Q
    ||||||||| |||||||||||||||| ||||||||| |||||  ||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||||    
T  22778625 cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact 22778723  T
Q  365 ttaca 369  Q
    |||||    
T  22778724 ttaca 22778728  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 17932096 - 17931981
Alignment:
Q  99 ggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaa 198  Q
    ||||||| | |||| ||||  ||||| |||||||| |||||| |||||||||||| || |||||| ||||||||||| |||| ||| | ||| |||||||    
T  17932096 ggttcataaactattagctccatctcttgactcttcagagaggttatcagattcttcaggctaagattgttcaagtcctttgcttcgtgaatggttgtaa 17931997  T
Q  199 ccttaggtctccactt 214  Q
    ||||||| ||||||||    
T  17931996 ccttaggcctccactt 17931981  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 23602419 - 23602332
Alignment:
Q  127 gactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtctccactt 214  Q
    ||||||| |||||||||||||| ||||||| ||||||  |||| |||| ||||| |||||| |||| ||||||||| || ||||||||    
T  23602419 gactcttcagagagcttatcaggttctccaagctaagtctgtttaagtattttgcttcctatatagatgtaacctttgggctccactt 23602332  T

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Target: scaffold0838 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0838
Description:

Target: scaffold0838; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 1818 - 1906
Alignment:
Q  120 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 208  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1818 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1906  T

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Target: scaffold0832 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0832
Description:

Target: scaffold0832; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 208
Target Start/End: Original strand, 1849 - 1937
Alignment:
Q  120 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaaccttaggtct 208  Q
    |||||||| || || ||||| ||||||||||| |||| ||| |||||||||| ||| |||| ||||| ||| ||||||||||| |||||    
T  1849 atctcatgtcttttgagagaacttatcagattttccaagcttagcttgttcatgtcctttgcttcctgaatggttgtaacctttggtct 1937  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Complemental strand, 11012833 - 11012773
Alignment:
Q  120 atctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttg 180  Q
    ||||||||||||| |||||||||||||||| ||||||  | |||||||||||| |||||||    
T  11012833 atctcatgactctctagagagcttatcagagtctccaatccaagcttgttcaattcttttg 11012773  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 12189863 - 12189954
Alignment:
Q  111 ataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaagtcttttgtttcctaaatagttgtaacctt 202  Q
    ||||||| |||| ||||| | || ||||| ||||||||||||| || ||| ||||||||||| || |||| ||||| ||| |||||||||||    
T  12189863 ataagctatatcacatgaattttgagagaacttatcagattcttcaggcttagcttgttcaaatcctttgcttcctgaatggttgtaacctt 12189954  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 5760659 - 5760794
Alignment:
Q  73 gagcaatagacttagatttcttcattggttcatcacctataagctttatctcatgactctttagagagcttatcagattctccatgctaagcttgttcaa 172  Q
    |||||||||||||| ||| |||   ||||||||| ||   |||||  |||||||||||||| |||||||| || ||| | |||| ||| | ||| |||||    
T  5760659 gagcaatagacttatattgcttagctggttcatctccatcaagctcaatctcatgactcttgagagagctaatgagactttccaagcttaccttattcaa 5760758  T
Q  173 gtcttttgtttcctaaatagttgtaaccttaggtct 208  Q
     || |||| ||||| |||||||||| |||| |||||    
T  5760759 ttcctttgcttcctgaatagttgtagcctttggtct 5760794  T

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