View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17769_low_2 (Length: 367)
Name: NF17769_low_2
Description: NF17769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17769_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 358
Target Start/End: Original strand, 43619029 - 43619370
Alignment:
| Q |
17 |
accatatgtgtaaggctcttgacattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgc |
116 |
Q |
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| T |
43619029 |
accatatgtgtaaggctcttgacattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgc |
43619128 |
T |
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| Q |
117 |
aagagagttccatgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43619129 |
aagagagttccatgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagc |
43619228 |
T |
|
| Q |
217 |
ccttgcttagctgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaaattggtatgattcg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43619229 |
ccttgcttagctgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaaattggtatgattcg |
43619328 |
T |
|
| Q |
317 |
gtaaatcattaatttctacttagcatcttatatcacctatga |
358 |
Q |
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| T |
43619329 |
gtaaatcattaatttctacttagcatcttatatcacctatga |
43619370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 28 - 302
Target Start/End: Original strand, 43626418 - 43626692
Alignment:
| Q |
28 |
aaggctcttgacattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagagagttcc |
127 |
Q |
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| T |
43626418 |
aaggcttttgaaattccttcagcagcaaatacactacgttactatgcaggtgctgctgataaaattcatggtgaggtattaaaatcttctggccaattcc |
43626517 |
T |
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| Q |
128 |
atgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgcttagc |
227 |
Q |
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| T |
43626518 |
atgcatacacactgatggaaccaattggtgttgtgggacacatcattccatggaatgctcccactatggttttcttcaccaaagttagcccttccttagc |
43626617 |
T |
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| Q |
228 |
tgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaa |
302 |
Q |
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| T |
43626618 |
tgctgggtgcaccatggttctcaaacctgctgaacaaacacctctttctgctttgttttatgcccatctagctaa |
43626692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 302
Target Start/End: Complemental strand, 32408623 - 32408372
Alignment:
| Q |
51 |
agcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagagagttccatgcttatacattgatggaacca |
150 |
Q |
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|||||||| | | ||||||||||| ||||| || ||||||||||| || |||| |||||| ||| | ||||| || || ||||| |||||||| ||| |
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| T |
32408623 |
agcaaatataatacgttactatgccggtgctgcggataaaattcacggcaaggttttaaaacctgctcgggagttgcacgcatatactttgatggagcca |
32408524 |
T |
|
| Q |
151 |
attggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgc-ttagctgctgggtgcaccatggtcgtc |
249 |
Q |
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| T |
32408523 |
atcggtgtcgttggacacattattccttggaattttcctagtactatgtttgctgctaaggtt-gctcctgctttggctgctggttgtactatggttctt |
32408425 |
T |
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| Q |
250 |
aaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaa |
302 |
Q |
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|| |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
32408424 |
aagcctgctgaacaaacacctctctctgctttgttttatgctcatcttgctaa |
32408372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 272
Target Start/End: Original strand, 32433282 - 32433421
Alignment:
| Q |
133 |
tatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgcttagctgctg |
232 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||| |||||||| || || ||| ||||||||| |||| | ||||| || ||||||| |
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| T |
32433282 |
tatactttgatggaacctattggtgttgttggacacattataccttggaatttcccaactattatgttctttgctaaggctgctccttgtttggctgctg |
32433381 |
T |
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| Q |
233 |
ggtgcaccatggtcgtcaaacctgctgagcaaacacctct |
272 |
Q |
| |
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| || || ||||| | || |||||||||||||||||||| |
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| T |
32433382 |
gttgtactatggttcttaagcctgctgagcaaacacctct |
32433421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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