View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17769_low_5 (Length: 281)
Name: NF17769_low_5
Description: NF17769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17769_low_5 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 51856255 - 51856519
Alignment:
| Q |
17 |
acatacttaagtattggtctgatatagacatcatcacagagcnnnnnnntaagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaag |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51856255 |
acatacttaagtattggtcagatatagacatcatcacagagcaaaaaaataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaag |
51856354 |
T |
|
| Q |
117 |
aattcttattatgtataataatgttgctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51856355 |
aattcttattatgtataataatgttgctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatat |
51856454 |
T |
|
| Q |
217 |
tgcttacaaaataacagtaatagttaacattacattgaactttgagactgattttcatctctaat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51856455 |
tgcttacaaaataacagtaatagttaacattacattgaactttgagactgattttcatctctaat |
51856519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 281
Target Start/End: Original strand, 8945441 - 8945705
Alignment:
| Q |
17 |
acatacttaagtattggtctgatatagacatcatcacagagcnnnnnnntaagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaag |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945441 |
acatacttaagtattggtcagatatagacatcatcacagagcaaaaaaataagtatctacattgtcaaaagggaaaataggtagagaatgtcataaaaag |
8945540 |
T |
|
| Q |
117 |
aattcttattatgtataataatgttgctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8945541 |
aattcttattatgtataataatgttgctacttttagttaaattgattttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatat |
8945640 |
T |
|
| Q |
217 |
tgcttacaaaataacagtaatagttaacattacattgaactttgagactgattttcatctctaat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8945641 |
tgcttacaaaataacagtaatagttaacattacattgaactttgagactgattttcatctataat |
8945705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 161 - 277
Target Start/End: Complemental strand, 128536 - 128421
Alignment:
| Q |
161 |
attttatttttctgtaatgcctttgacctattgttgcaataaattgtcaagaatattgcttacaaaataacagtaatagttaacattacattgaactttg |
260 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||| ||||||||||||||| | |||||||||||||| |
|
|
| T |
128536 |
attttttttttctgtaatacctttgacctattgttgcaataaattgttaagagtattgc-tacaaaagaacagtaatagttaataatacattgaactttg |
128438 |
T |
|
| Q |
261 |
agactgattttcatctc |
277 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
128437 |
agactaattttcatctc |
128421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University