View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17769_low_6 (Length: 244)

Name: NF17769_low_6
Description: NF17769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17769_low_6
NF17769_low_6
[»] chr4 (1 HSPs)
chr4 (19-134)||(33994537-33994652)
[»] chr2 (2 HSPs)
chr2 (17-66)||(10592727-10592776)
chr2 (165-207)||(10592836-10592878)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 33994537 - 33994652
Alignment:
Q  19 cggtcacatactatatcattttctctaagtgtaaagataacaactaaatgaaatattagttactactttggactagacctattattaatgttattattta 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33994537 cggtcacatactatatcattttctctaagtgtaaagataacaactaaatgaaatattagttactactttggactggacctattattaatgttattattta 33994636  T
Q  119 aacgttgtcgcgtgga 134  Q
    ||| || |||||||||    
T  33994637 aacattatcgcgtgga 33994652  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 10592727 - 10592776
Alignment:
Q  17 tccggtcacatactatatcattttctctaagtgtaaagataacaactaaa 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10592727 tccggtcacatactatatcattttctctaagtgtaaagataacaactaaa 10592776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 10592836 - 10592878
Alignment:
Q  165 tcaattaaacaacattacccctgcatcagcttccacgttctaa 207  Q
    |||||| ||||||||||||||||||||||||||||| ||||||    
T  10592836 tcaattcaacaacattacccctgcatcagcttccacattctaa 10592878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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