View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17769_low_8 (Length: 221)
Name: NF17769_low_8
Description: NF17769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17769_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 2018785 - 2018593
Alignment:
| Q |
18 |
agatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtc |
117 |
Q |
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| T |
2018785 |
agatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtc |
2018686 |
T |
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| Q |
118 |
ctatagaagcactcacagaagaaggaagtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatg |
210 |
Q |
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| T |
2018685 |
ctatagaagcactcacagaagacagaagtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatg |
2018593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 1963027 - 1963219
Alignment:
| Q |
18 |
agatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtc |
117 |
Q |
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| T |
1963027 |
agatcaagtcaatcttacaagttctttctccaatgtgttgaaaaattccgtctttttgatggtgttcttattaatagcttcctggaaattgaaaagggtc |
1963126 |
T |
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| Q |
118 |
ctatagaagcactcacagaagaaggaagtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatg |
210 |
Q |
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| T |
1963127 |
ctatagaagcaatgacagatgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatg |
1963219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 2015402 - 2015210
Alignment:
| Q |
18 |
agatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtc |
117 |
Q |
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| T |
2015402 |
agatccagtcaatcttacaaatacttactccaaggtgttgaaaaattgcgtctttttgatggtattcttattaatagtttcatagaaatcgaaaacggtc |
2015303 |
T |
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| Q |
118 |
ctatagaagcactcacagaagaaggaagtggcaaccctgatgtttatgctgttggaccaattatccaaacgccaaccaaatcgggtgatgatg |
210 |
Q |
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| T |
2015302 |
ctatagaagcactgacagacgaaggaagtgaaaaccttcttgtgtatgctgttggacccattatccaaacactaacaacatctggtgatgatg |
2015210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 184
Target Start/End: Original strand, 2432951 - 2433082
Alignment:
| Q |
53 |
tgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtcctatagaagcactcacagaagaaggaagtggcaac |
152 |
Q |
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| T |
2432951 |
tgttaaaaaataccgttttgttgatggtgttcttgttaatagcttcttagaaatggaaaggggtcctataaaagcactgacagatgaaggaagtgaaaat |
2433050 |
T |
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| Q |
153 |
cctgatgtttatgctgttggaccaattatcca |
184 |
Q |
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| T |
2433051 |
cctcttgtgtatcctgttggacccatcatcca |
2433082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 2012003 - 2011837
Alignment:
| Q |
18 |
agatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtc |
117 |
Q |
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|||||||||||| ||||||||| ||| ||| ||| |||| ||| || || || ||||||| ||||| ||||||||||| ||||||| |||| || | |
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| T |
2012003 |
agatcaagtcaagcttacaaatacttccttcaacatgttaaaagtttaagttttgctgatggtgttcttgttaatagcttcttagaaatggaaatgggac |
2011904 |
T |
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| Q |
118 |
ctatagaagcactcacagaagaaggaagtggcaaccctgatgtttatgctgttggaccaattatcca |
184 |
Q |
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||||| | ||| | ||||| |||||||||||||||||| ||| ||| |||||||||| || ||||| |
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| T |
2011903 |
ctataaatgcattgacagaggaaggaagtggcaacccttctgtctatcctgttggacccatcatcca |
2011837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 74 - 175
Target Start/End: Original strand, 1964747 - 1964848
Alignment:
| Q |
74 |
tgatggtattcttattaatagcttcctagaaattgaaaaaggtcctatagaagcactcacagaagaaggaagtggcaaccctgatgtttatgctgttgga |
173 |
Q |
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||||||| ||||| ||||||||||| ||||||| |||| || |||||| |||||| ||||| |||||||||||||||||| ||| ||| |||||||| |
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| T |
1964747 |
tgatggtgttcttgttaatagcttcttagaaatggaaatgggacctataaaagcaccgacagaggaaggaagtggcaacccttctgtgtatcctgttgga |
1964846 |
T |
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| Q |
174 |
cc |
175 |
Q |
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|| |
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| T |
1964847 |
cc |
1964848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 5902206 - 5902375
Alignment:
| Q |
18 |
agatcaagtcaatcttacaaattcttacttgaacgtgttgaaaaattccgtctttttgatggtattcttattaatagcttcctagaaattgaaaaaggtc |
117 |
Q |
| |
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||||| || |||||||||||||||||||| ||||| || ||| |||| || | ||||||| || ||||||||||||||||| |||||||||||||||| |
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| T |
5902206 |
agatcgagccaatcttacaaattcttactccaacgtattaaaagattctgttctgttgatggcatacttattaatagcttcctggaaattgaaaaaggtc |
5902305 |
T |
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| Q |
118 |
ctatagaagcactcacagaagaaggaagtggcaaccctgatgtttatgctgttggaccaattatccaaac |
187 |
Q |
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||||||||||||| ||||||||||||||||| ||||||| ||| || || ||||||| ||||||||||| |
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| T |
5902306 |
ctatagaagcactgacagaagaaggaagtggtaaccctgctgtgtaccctattggacccattatccaaac |
5902375 |
T |
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