View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17769_low_9 (Length: 212)

Name: NF17769_low_9
Description: NF17769
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17769_low_9
NF17769_low_9
[»] chr3 (9 HSPs)
chr3 (17-199)||(43488863-43489045)
chr3 (17-71)||(45568710-45568764)
chr3 (17-73)||(40487092-40487148)
chr3 (17-69)||(47895922-47895974)
chr3 (17-68)||(20988021-20988072)
chr3 (17-62)||(9998244-9998289)
chr3 (17-62)||(10108016-10108061)
chr3 (17-62)||(10232848-10232893)
chr3 (17-62)||(21431403-21431448)
[»] chr5 (5 HSPs)
chr5 (17-74)||(13006994-13007051)
chr5 (17-74)||(6012404-6012461)
chr5 (17-48)||(11074166-11074197)
chr5 (17-72)||(11977203-11977258)
chr5 (17-68)||(38597569-38597620)
[»] chr1 (8 HSPs)
chr1 (17-74)||(35462304-35462361)
chr1 (17-72)||(21947883-21947938)
chr1 (17-71)||(31983952-31984006)
chr1 (19-71)||(26535172-26535224)
chr1 (17-68)||(35484644-35484695)
chr1 (17-68)||(51916918-51916969)
chr1 (17-62)||(10776726-10776771)
chr1 (17-65)||(14872417-14872465)
[»] chr8 (7 HSPs)
chr8 (17-65)||(17693877-17693925)
chr8 (17-72)||(31013835-31013890)
chr8 (17-71)||(10377468-10377522)
chr8 (17-62)||(25191330-25191375)
chr8 (17-61)||(18537630-18537674)
chr8 (17-62)||(27110728-27110773)
chr8 (17-62)||(45446075-45446120)
[»] chr4 (10 HSPs)
chr4 (17-68)||(22610976-22611027)
chr4 (17-67)||(33920845-33920895)
chr4 (17-62)||(26633936-26633981)
chr4 (17-69)||(19853777-19853829)
chr4 (17-72)||(56156819-56156874)
chr4 (17-63)||(2520574-2520620)
chr4 (17-67)||(13633907-13633957)
chr4 (17-62)||(4143020-4143065)
chr4 (16-48)||(9165308-9165340)
chr4 (16-48)||(29961194-29961226)
[»] chr6 (5 HSPs)
chr6 (17-71)||(3913839-3913893)
chr6 (17-62)||(605983-606028)
chr6 (17-68)||(68266-68317)
chr6 (17-62)||(33053434-33053479)
chr6 (16-48)||(3354988-3355020)
[»] chr2 (7 HSPs)
chr2 (17-67)||(4098886-4098936)
chr2 (17-71)||(7646251-7646305)
chr2 (17-74)||(4778529-4778586)
chr2 (17-73)||(12677562-12677618)
chr2 (16-62)||(7448036-7448082)
chr2 (17-74)||(27097671-27097728)
chr2 (16-68)||(43397384-43397436)
[»] chr7 (4 HSPs)
chr7 (17-72)||(8013731-8013786)
chr7 (17-60)||(34899870-34899913)
chr7 (17-63)||(12141574-12141620)
chr7 (17-63)||(48061201-48061247)
[»] scaffold0088 (1 HSPs)
scaffold0088 (17-74)||(50552-50609)
[»] scaffold0026 (1 HSPs)
scaffold0026 (17-74)||(72130-72187)
[»] scaffold0127 (1 HSPs)
scaffold0127 (17-73)||(15259-15315)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 43488863 - 43489045
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaaccttaaaatattaatttgttaaggagtattttgcggaggataa 116  Q
    |||||||||||||||| |||||| |||||||| | ||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  43488863 aaagaaagtttagagagaagttgaagtttctctcactaaaaaactagggccggctaaccttaaattattaatttgttaacgagtattttgcggaggataa 43488962  T
Q  117 ttagacaatattttatctagtgtgttcaaagaagattctaaaataataaatgcaccgaatgatgtttgaatttataagatgtg 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  43488963 ttagacaatcttttatctagtgtgttcaaagaagattctaaaataataaatgcaccgaatgatgcttgaatttataagatgtg 43489045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 45568710 - 45568764
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgact 71  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||    
T  45568710 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggccgact 45568764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 40487148 - 40487092
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaa 73  Q
    |||||||||||||||| ||||||||||||||| | ||| |||| || ||||||||||    
T  40487148 aaagaaagtttagagagaagttggagtttctctcactagaaaattagggccgactaa 40487092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 47895974 - 47895922
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccga 69  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||||    
T  47895974 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggccga 47895922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 20988021 - 20988072
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccg 68  Q
    |||| ||||||||||| ||||||||||||||| | ||||||||||| |||||    
T  20988021 aaaggaagtttagagagaagttggagtttctctcactaaaaaactagggccg 20988072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 9998289 - 9998244
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  9998289 aaagaaagtttagagagaagttggagtttctcccactagaaaacta 9998244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 10108061 - 10108016
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  10108061 aaagaaagtttagagagaagttggagtttctcccactagaaaacta 10108016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 10232893 - 10232848
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  10232893 aaagaaagtttagagagaagttggagtttctcccactagaaaacta 10232848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 21431448 - 21431403
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  21431448 aaagaaagtttagagagaagttggagtttctcccactagaaaacta 21431403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 13007051 - 13006994
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaac 74  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||| ||||| |||||    
T  13007051 aaagaaagtttagagagaagttggagtttctcccactaaaaaactagggccggctaac 13006994  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 6012404 - 6012461
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaac 74  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||  ||||| |||||    
T  6012404 aaagaaagtttagagagaagttggagtttctcccactaaaaaactggggccggctaac 6012461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 11074166 - 11074197
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctc 48  Q
    ||||||||||||||||||||||||||||||||    
T  11074166 aaagaaagtttagagaaaagttggagtttctc 11074197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 11977203 - 11977258
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgacta 72  Q
    |||||||||||||||| ||||| ||||||||| | ||| ||||||| |||||||||    
T  11977203 aaagaaagtttagagagaagttagagtttctctcactagaaaactagggccgacta 11977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 38597620 - 38597569
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccg 68  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| |||||    
T  38597620 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggccg 38597569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 35462304 - 35462361
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaac 74  Q
    |||||||||||||||| ||||| ||||||||| | ||||||||||||||||| |||||    
T  35462304 aaagaaagtttagagataagttagagtttctcccactaaaaaactaaggccggctaac 35462361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 21947883 - 21947938
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgacta 72  Q
    ||||||||||||||||||| ||| |||||||| | ||| |||||||||||||||||    
T  21947883 aaagaaagtttagagaaaaattgaagtttctctcactagaaaactaaggccgacta 21947938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 31984006 - 31983952
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgact 71  Q
    |||||||||||||||| ||||||||||||||| | ||||||| ||| ||||||||    
T  31984006 aaagaaagtttagagagaagttggagtttctctcactaaaaatctagggccgact 31983952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 26535224 - 26535172
Alignment:
Q  19 agaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgact 71  Q
    |||||||||||||| ||||| ||||||||| | ||| ||||||||||||||||    
T  26535224 agaaagtttagagagaagttagagtttctctcactagaaaactaaggccgact 26535172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 35484644 - 35484695
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccg 68  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| |||||    
T  35484644 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggccg 35484695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 51916918 - 51916969
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccg 68  Q
    ||||||||||||||||||| ||| |||||||| | ||||||||||| |||||    
T  51916918 aaagaaagtttagagaaaaattgaagtttctctcactaaaaaactagggccg 51916969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 10776726 - 10776771
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| || |||||||||||| | |||||||||||    
T  10776726 aaagaaagtttagagagaaattggagtttctctccctaaaaaacta 10776771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 14872465 - 14872417
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaagg 65  Q
    |||||||||| ||| | ||||||||||||||| | ||||||||||||||    
T  14872465 aaagaaagttcagaaagaagttggagtttctctcactaaaaaactaagg 14872417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 17693877 - 17693925
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaagg 65  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||||||    
T  17693877 aaagaaagtttagagagaagttggagtttctctcactaaaaaactaagg 17693925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 31013835 - 31013890
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgacta 72  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| |||||||||    
T  31013835 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggccgacta 31013890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 10377522 - 10377468
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgact 71  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||    
T  10377522 aaagaaagtttagagagaagttggagtttctcccactagaaaactagggccgact 10377468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 25191330 - 25191375
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||    
T  25191330 aaagaaagtttagagagaagttggagtttctctcactaaaaaacta 25191375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 18537630 - 18537674
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaact 61  Q
    ||||||||||||||||||||||| |||||||| | ||||||||||    
T  18537630 aaagaaagtttagagaaaagttgaagtttctctcactaaaaaact 18537674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 27110728 - 27110773
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  27110728 aaagaaagtttagagagaagttggagtttctctcactagaaaacta 27110773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 45446075 - 45446120
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  45446075 aaagaaagtttagagagaagttggagtttctctcactagaaaacta 45446120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 22611027 - 22610976
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccg 68  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||| |||||    
T  22611027 aaagaaagtttagagagaagttggagtttctcccactaaaaaactagggccg 22610976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 33920895 - 33920845
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggcc 67  Q
    ||||||||||||| ||||||||| |||||||| | ||||||||||||||||    
T  33920895 aaagaaagtttagggaaaagttgaagtttctctcactaaaaaactaaggcc 33920845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 26633936 - 26633981
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | |||||||||||    
T  26633936 aaagaaagtttagagagaagttggagtttctctcactaaaaaacta 26633981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 19853777 - 19853829
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccga 69  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||||    
T  19853777 aaagaaagtttagagagaagttggagtttctcccactagaaaactagggccga 19853829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 56156819 - 56156874
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgacta 72  Q
    |||||||||||||||| ||||||||||||||| |  |||||||||| | |||||||    
T  56156819 aaagaaagtttagagagaagttggagtttctctcaataaaaaactaggaccgacta 56156874  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 2520620 - 2520574
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaa 63  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||||    
T  2520620 aaagaaagtttagagagaagttggagtttctctcactagaaaactaa 2520574  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 13633957 - 13633907
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggcc 67  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||    
T  13633957 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggcc 13633907  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 4143020 - 4143065
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||| ||| ||||||||||||||| | |||||||||||    
T  4143020 aaagaaagtttatagagaagttggagtttctcccactaaaaaacta 4143065  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 9165308 - 9165340
Alignment:
Q  16 aaaagaaagtttagagaaaagttggagtttctc 48  Q
    ||||||||||||||||| |||||||||||||||    
T  9165308 aaaagaaagtttagagagaagttggagtttctc 9165340  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 29961194 - 29961226
Alignment:
Q  16 aaaagaaagtttagagaaaagttggagtttctc 48  Q
    ||||||||||||||||| |||||||||||||||    
T  29961194 aaaagaaagtttagagagaagttggagtttctc 29961226  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 3913839 - 3913893
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgact 71  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||    
T  3913839 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggccgact 3913893  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 606028 - 605983
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||||||||||||||||||| | ||| |||||||    
T  606028 aaagaaagtttagagaaaagttggagtttctcccactagaaaacta 605983  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 68266 - 68317
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccg 68  Q
    |||||||||||||||| |||||||||||||||   ||||||||||| |||||    
T  68266 aaagaaagtttagagagaagttggagtttctcctactaaaaaactagggccg 68317  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 33053434 - 33053479
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    |||||||||||||||| ||||||||||||||| | ||| |||||||    
T  33053434 aaagaaagtttagagagaagttggagtttctcccactagaaaacta 33053479  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 3355020 - 3354988
Alignment:
Q  16 aaaagaaagtttagagaaaagttggagtttctc 48  Q
    ||||||||||||||||| |||||||||||||||    
T  3355020 aaaagaaagtttagagataagttggagtttctc 3354988  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 4098936 - 4098886
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggcc 67  Q
    |||||||||||||||| ||||||||||||||| | ||||||||||| ||||    
T  4098936 aaagaaagtttagagagaagttggagtttctcccactaaaaaactagggcc 4098886  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 7646305 - 7646251
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgact 71  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||||||    
T  7646305 aaagaaagtttagagagaagttggagtttctcccactagaaaactagggccgact 7646251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 4778586 - 4778529
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaac 74  Q
    |||||||||||||| | ||||||||||||||| | ||||||||||| ||||| |||||    
T  4778586 aaagaaagtttagaaagaagttggagtttctcccactaaaaaactagggccggctaac 4778529  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 12677562 - 12677618
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaa 73  Q
    |||||||||||||||| ||||||||||||||| | ||| ||||||| ||||| ||||    
T  12677562 aaagaaagtttagagagaagttggagtttctctcactagaaaactagggccggctaa 12677618  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 7448082 - 7448036
Alignment:
Q  16 aaaagaaagtttagagaaaagttggagtttctcacgctaaaaaacta 62  Q
    ||||||||||||||||| ||||||||||||||| | ||| |||||||    
T  7448082 aaaagaaagtttagagagaagttggagtttctcccactagaaaacta 7448036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 27097671 - 27097728
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaac 74  Q
    |||||||||||||||| ||||||||||||||  | ||| ||||||| ||||| |||||    
T  27097671 aaagaaagtttagagagaagttggagtttcttccactagaaaactagggccggctaac 27097728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 43397384 - 43397436
Alignment:
Q  16 aaaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccg 68  Q
    ||||||||||||| ||| ||||||||||||||| | ||| ||||||| |||||    
T  43397384 aaaagaaagtttaaagagaagttggagtttctctcactagaaaactagggccg 43397436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 8013731 - 8013786
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgacta 72  Q
    |||||||||||||||| |||||| |||||||| | ||||||||||| ||| |||||    
T  8013731 aaagaaagtttagagagaagttgaagtttctctcactaaaaaactagggctgacta 8013786  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 34899870 - 34899913
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaac 60  Q
    |||||||||||||||| ||||||||||||||| | |||||||||    
T  34899870 aaagaaagtttagagagaagttggagtttctcccactaaaaaac 34899913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 12141574 - 12141620
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaa 63  Q
    |||||||||||||||| ||||||||||||||| | ||||||| ||||    
T  12141574 aaagaaagtttagagagaagttggagtttctctctctaaaaacctaa 12141620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 48061247 - 48061201
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaa 63  Q
    |||||||||||||||| ||||||||||||||| | ||||||| ||||    
T  48061247 aaagaaagtttagagagaagttggagtttctctctctaaaaacctaa 48061201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 50609 - 50552
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaac 74  Q
    |||||||||||||| | ||||||||||||||| | ||| ||||||| ||||| |||||    
T  50609 aaagaaagtttagaaagaagttggagtttctcccactagaaaactagggccggctaac 50552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 72130 - 72187
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaac 74  Q
    |||||||||||||||| |||||| |||||||| | ||| ||||||| ||||| |||||    
T  72130 aaagaaagtttagagagaagttgaagtttctcccactagaaaactagggccggctaac 72187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 15315 - 15259
Alignment:
Q  17 aaagaaagtttagagaaaagttggagtttctcacgctaaaaaactaaggccgactaa 73  Q
    |||||||||||||||| |||||| |||||||| | ||| ||||||| ||||| ||||    
T  15315 aaagaaagtttagagagaagttgaagtttctctcactagaaaactagggccggctaa 15259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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