View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1776_low_1 (Length: 291)
Name: NF1776_low_1
Description: NF1776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1776_low_1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 39210417 - 39210142
Alignment:
| Q |
15 |
cactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcg |
114 |
Q |
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| T |
39210417 |
cactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcg |
39210318 |
T |
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| Q |
115 |
atttgcaaaaatgacagtgatccaagtaccagccaaaagtcgataaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttt |
214 |
Q |
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| T |
39210317 |
atttgcaaaaatgacagtgatccaagtaccagccaaaagcacataaaattcttta-aaaatgtccaaccgtcagtaaaatagactttcacgttcctcttt |
39210219 |
T |
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| Q |
215 |
ttgacagccacctcaaactcattcttgtatacatcaaatggagcatccattataatatatattctacactcacaaca |
291 |
Q |
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| T |
39210218 |
ttgacagccacctcaaagtcattcttgtatacatcaaatggaacctccattataatatatattctacactcacaaca |
39210142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 7673907 - 7673978
Alignment:
| Q |
81 |
gcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa |
152 |
Q |
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| T |
7673907 |
gcatatttctaacttcaaacagaaaaatgtgtcgatttgaaaaaataattgtgacccaagtaccagccaaaa |
7673978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 27510572 - 27510799
Alignment:
| Q |
15 |
cactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcg |
114 |
Q |
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| T |
27510572 |
cactatggttctgcaacaacattctttgtggaggagtgctttgaggatacaccaactcatctccatgtatattcctaacttcaaacagaaaaaggtgtcg |
27510671 |
T |
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| Q |
115 |
atttgcaaaaatgacagtgatccaagtaccagccaaaagtcga-taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctctt |
213 |
Q |
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| T |
27510672 |
attttcaaaaatgacagtgatccaagtaccagccaaaagcccattaaaattcttt-aaaaatgtccaaccgtcagtaaaatagactttctcgttcctctt |
27510770 |
T |
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| Q |
214 |
tttgacagccacctcaaactcattcttgt |
242 |
Q |
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| T |
27510771 |
tttgacagccacctcaaactcattcttgt |
27510799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 42091774 - 42091912
Alignment:
| Q |
101 |
agaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtc-gataaaattctttaaaaaatgtccaaccgtcggtaaaatagact |
199 |
Q |
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| T |
42091774 |
agaaaaaggcgtcgatttgcaaaaatgacagtgatccaagaaccagccaaaatcctgtaaaaattcttcaaaaca-gcccaaccatcatcaaaataaact |
42091872 |
T |
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| Q |
200 |
ttctcgttcctctttttgacagccacctcaaactcattct |
239 |
Q |
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| T |
42091873 |
ttcccgttcctcttttccacagctacctcaatctcattct |
42091912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 31949368 - 31949210
Alignment:
| Q |
58 |
aggatacaccaactcatctccatgcatattcctaacttcaaacagaaaaaggtgtcgatttgcaaaaatgacagtgatccaagtaccagccaaaagtcga |
157 |
Q |
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| T |
31949368 |
aggatacaccaattaaactccatgcagatttcttaccaccatcagaaaaagatgtcgatttgcaaaaataattgtgatccaagcaccacccaaaatccca |
31949269 |
T |
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| Q |
158 |
-taaaattctttaaaaaatgtccaaccgtcggtaaaatagactttctcgttcctcttttt |
216 |
Q |
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| T |
31949268 |
ttaaagctcttt-aaaaatgtccaaccatcagtaaaataaaccctcccgttcttcttttt |
31949210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 27592805 - 27592764
Alignment:
| Q |
111 |
gtcgatttgcaaaaatgacagtgatccaagtaccagccaaaa |
152 |
Q |
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| T |
27592805 |
gtcgatttgcaaaaatgacagtggtccaagaaccaaccaaaa |
27592764 |
T |
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