View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1776_low_2 (Length: 276)

Name: NF1776_low_2
Description: NF1776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1776_low_2
NF1776_low_2
[»] chr3 (1 HSPs)
chr3 (27-260)||(36601953-36602184)
[»] chr6 (4 HSPs)
chr6 (29-238)||(5746812-5747022)
chr6 (60-259)||(34092990-34093185)
chr6 (122-259)||(31611526-31611661)
chr6 (195-241)||(13098412-13098458)
[»] chr7 (5 HSPs)
chr7 (27-235)||(43344534-43344743)
chr7 (79-232)||(30663197-30663349)
chr7 (78-238)||(1819711-1819871)
chr7 (194-241)||(9107355-9107402)
chr7 (36-76)||(26385858-26385898)
[»] scaffold0127 (1 HSPs)
scaffold0127 (27-238)||(21238-21450)
[»] chr5 (2 HSPs)
chr5 (46-237)||(8987620-8987809)
chr5 (27-75)||(6159827-6159875)
[»] scaffold0620 (1 HSPs)
scaffold0620 (60-259)||(8324-8519)
[»] chr4 (2 HSPs)
chr4 (27-238)||(33283635-33283845)
chr4 (195-241)||(12296370-12296416)
[»] chr8 (1 HSPs)
chr8 (137-238)||(17819571-17819673)
[»] chr1 (1 HSPs)
chr1 (202-238)||(33383664-33383700)


Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 27 - 260
Target Start/End: Original strand, 36601953 - 36602184
Alignment:
Q  27 agagactataaaggcgcagtatataggcggatcacccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacac 126  Q
    |||||||||||||| ||  ||||||||||||||| |||||||||| | ||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  36601953 agagactataaaggtgcgctatataggcggatcatccaaaataaatatcagtaaagatacgaaatacacccatcacctccctaagacc--ccatcaacac 36602050  T
Q  127 ccataaaccccacaaccaccaagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgcta 226  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||    
T  36602051 ccataaaccccacaaccaccaagaccaatttcaccgtctaaaacaaactccaccgtgaacaaccaccgaaaacaaaattcataaccacccatcgccgcta 36602150  T
Q  227 ctcactccaaaataaaacatccctcgcaatcaac 260  Q
    ||||||||||||||||||| ||||||||||||||    
T  36602151 ctcactccaaaataaaacacccctcgcaatcaac 36602184  T

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Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 29 - 238
Target Start/End: Complemental strand, 5747022 - 5746812
Alignment:
Q  29 agactataaaggcgcagtatataggcggatcacccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacaccc 128  Q
    |||||| |||||||  ||||||||||||| |||| ||||| |||| || |||||| ||||| ||||| |||||||| |||||||||| || |||||||||    
T  5747022 agactacaaaggcgtcgtatataggcggaacacctaaaatgaacatcaataaagacacgaattacacacatcacctacctaagacctaccttcaacaccc 5746923  T
Q  129 ataaaccccacaaccaccaagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccg-aaaacgaaatccataaccacccatcgccgctac 227  Q
    || ||||||||||||||||| ||||||||||| | |||||||| |||| | ||  ||||||||| | ||||| |||||||||| ||||||||||||||||    
T  5746922 atgaaccccacaaccaccaaaaccaatttcaccgcctaaaacatactccatcgcaaacaaccactgaaaaactaaatccataagcacccatcgccgctac 5746823  T
Q  228 tcactccaaaa 238  Q
    |||||||||||    
T  5746822 tcactccaaaa 5746812  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 259
Target Start/End: Complemental strand, 34093185 - 34092990
Alignment:
Q  60 acccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacacccataaaccccacaaccaccaagaccaatttca 159  Q
    ||||||||||||||||| |||||| || |||||||| |||||||  ||||||||||||| ||||||||||| ||||| ||||||| ||| | ||||||||    
T  34093185 acccaaaataaacaccaataaagacacaaaatacacacatcacccacctaagacctgccttcaacacccatgaaccctacaacca-caaaatcaatttca 34093087  T
Q  160 cagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgctactcactccaaaataaaacatccctcgcaatcaa 259  Q
    | | ||||||||| ||| | |   || |||||||  |||| ||||||| || ||||||||||||||||||||||||||   ||||| |||||||||||||    
T  34093086 ccgcctaaaacaatctccatc-acaataaccacctgaaacaaaatccacaagcacccatcgccgctactcactccaaa--gaaacacccctcgcaatcaa 34092990  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 31611661 - 31611526
Alignment:
Q  122 aacacccataaaccccacaaccaccaagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgc 221  Q
    ||||||||| ||||||||||||||||| | || |||||| | ||||||||||||| | |  |||||||||  | ||||||||||||||| || |||| ||    
T  31611661 aacacccattaaccccacaaccaccaaaatcactttcaccgcctaaaacaaactccatcacgaacaaccaatggaaacgaaatccataagcatccattgc 31611562  T
Q  222 cgctactcactccaaaataaaacatccctcgcaatcaa 259  Q
    ||||||||||||||||  |||||| |||||||||||||    
T  31611561 cgctactcactccaaa--aaaacacccctcgcaatcaa 31611526  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Original strand, 13098412 - 13098458
Alignment:
Q  195 aaaacgaaatccataaccacccatcgccgctactcactccaaaataa 241  Q
    ||||| ||||||||||| ||||||||||||||||||  |||||||||    
T  13098412 aaaacaaaatccataacaacccatcgccgctactcaacccaaaataa 13098458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 27 - 235
Target Start/End: Original strand, 43344534 - 43344743
Alignment:
Q  27 agagactataaaggcgcagtatataggcggatcacccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacac 126  Q
    |||||||| ||| | || |||||||||||||  || |||||||||||||| |||||| || |||||||| | |||||| ||||||||||||| |||||||    
T  43344534 agagactacaaatgtgccgtatataggcggaaaactcaaaataaacaccaataaagacacaaaatacacacgtcacctacctaagacctgccttcaacac 43344633  T
Q  127 cca-taaaccccacaaccaccaagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgct 225  Q
    ||| | |||||||||||||| || ||||||  ||| | ||||||||||||| | |||||||||||||| ||||||||||| |||| ||||||||||||||    
T  43344634 ccaatgaaccccacaaccacaaacaccaataccaccgcctaaaacaaactccatcgtgaacaaccaccaaaaacgaaatctataagcacccatcgccgct 43344733  T
Q  226 actcactcca 235  Q
    |||| |||||    
T  43344734 actcgctcca 43344743  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 30663349 - 30663197
Alignment:
Q  79 aaagatacgaaatacactcatcacctccctaagacctgccatcaacacccataaaccccacaaccaccaagaccaatttcacagtctaaaacaaactcta 178  Q
    ||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| |||||| ||||||||||||| |    
T  30663349 aaagacacgaaaagcactcatcacctccctaagacctaccatcaacacccataaagcccacaaccaccaaaaccaatatcacag-ctaaaacaaactcca 30663251  T
Q  179 ccgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgctactcact 232  Q
      |  |||||||||  ||||| |||||||||| |||||||||||||||||||||    
T  30663250 tagcaaacaaccactaaaaacaaaatccataagcacccatcgccgctactcact 30663197  T

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Target: chr7; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 238
Target Start/End: Original strand, 1819711 - 1819871
Alignment:
Q  78 taaagatacgaaatacactcatcacctccctaagacctgccatcaacacccataaaccccacaaccaccaagaccaatttcacagtctaaaacaaactct 177  Q
    |||||||  ||||||||| |||||||| | |||||||| || ||||||||||| ||||||| |||||| || |||||||||||   |||||||||||||     
T  1819711 taaagatgtgaaatacacacatcacctacttaagacctaccttcaacacccatgaaccccataaccacaaaaaccaatttcactacctaaaacaaactcc 1819810  T
Q  178 accgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgctactcactccaaaa 238  Q
    | ||  ||||||||  | |||||||||||||||  ||||||||||||||||||||||||||    
T  1819811 aacgcaaacaaccattggaaacgaaatccataaatacccatcgccgctactcactccaaaa 1819871  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Complemental strand, 9107402 - 9107355
Alignment:
Q  194 gaaaacgaaatccataaccacccatcgccgctactcactccaaaataa 241  Q
    |||||||| |||||||||||||||||||| |||||||  |||||||||    
T  9107402 gaaaacgatatccataaccacccatcgccactactcatcccaaaataa 9107355  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 26385858 - 26385898
Alignment:
Q  36 aaaggcgcagtatataggcggatcacccaaaataaacacca 76  Q
    |||| ||| ||||||||||||| ||||||||||||||||||    
T  26385858 aaagacgccgtatataggcggaacacccaaaataaacacca 26385898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 238
Target Start/End: Original strand, 21238 - 21450
Alignment:
Q  27 agagactataaaggcgcagtatataggcggatcacccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacac 126  Q
    |||||||| ||||| |  ||||||||||||| |||||||||| |||| || |||||| ||||| ||||| | |||||| |||||||||| || |||||||    
T  21238 agagactacaaaggtgtcgtatataggcggaacacccaaaatgaacatcaataaagacacgaattacacacgtcacctacctaagacctaccttcaacac 21337  T
Q  127 ccataaaccccacaaccaccaagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccg-aaaacgaaatccataaccacccatcgccgct 225  Q
    |||| ||||||||||||||||| ||||||||||| | |||||||| |||| | ||  ||||||| | | ||||| |||||||||| ||||||||||||||    
T  21338 ccatgaaccccacaaccaccaaaaccaatttcaccgcctaaaacatactccatcgcaaacaaccgctgaaaaactaaatccataagcacccatcgccgct 21437  T
Q  226 actcactccaaaa 238  Q
    |||||||||||||    
T  21438 actcactccaaaa 21450  T

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Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 8987620 - 8987809
Alignment:
Q  46 tatataggcggatcacccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacacccataaaccccacaaccac 145  Q
    |||||| ||||| |||||||||||||||||| |||||| ||||||||||| || ||||  |||||||||| || ||||||||||| |||||||| |||||    
T  8987620 tatatatgcggaacacccaaaataaacaccaataaagacacgaaatacacacagcacccacctaagacctaccttcaacacccatgaaccccaccaccac 8987719  T
Q  146 caagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgctactcactccaaa 237  Q
    ||| ||||||||||| | || ||| |||||||| |   |||||||||   ||||||||||||||||||| ||||||||||||||||||||||    
T  8987720 caaaaccaatttcaccgcct-aaagaaactctatc-ccaacaaccacttgaaacgaaatccataaccactcatcgccgctactcactccaaa 8987809  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 6159875 - 6159827
Alignment:
Q  27 agagactataaaggcgcagtatataggcggatcacccaaaataaacacc 75  Q
    |||||||| |||||||| ||||||||||||| |||||||||||||||||    
T  6159875 agagactacaaaggcgctgtatataggcggaacacccaaaataaacacc 6159827  T

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Target: scaffold0620 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 60 - 259
Target Start/End: Complemental strand, 8519 - 8324
Alignment:
Q  60 acccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacacccataaaccccacaaccaccaagaccaatttca 159  Q
    ||||||||||||||||| |||||| || |||||||| |||||||  ||||||||||||| ||||||||||| ||||| ||||||| ||| | ||||||||    
T  8519 acccaaaataaacaccaataaagacacaaaatacacacatcacccacctaagacctgccttcaacacccatgaaccctacaacca-caaaatcaatttca 8421  T
Q  160 cagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgctactcactccaaaataaaacatccctcgcaatcaa 259  Q
    | | ||||||||| ||| | |   || |||||||  |||| ||||||| || ||||||||||||||||||||||||||   ||||| |||||||||||||    
T  8420 ccgcctaaaacaatctccatc-acaataaccacctgaaacaaaatccacaagcacccatcgccgctactcactccaaa--gaaacacccctcgcaatcaa 8324  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 238
Target Start/End: Original strand, 33283635 - 33283845
Alignment:
Q  27 agagactataaaggcgcagtatataggcggatcacccaaaataaacaccagtaaagatacgaaatacactcatcacctccctaagacctgccatcaacac 126  Q
    ||||| ||||||| ||  |||||||| |||| || ||||||||||||||  |||| | ||||| |||   ||||||||  | |||||||    |||||||    
T  33283635 agagattataaagacgttgtatatagacggaacatccaaaataaacaccgataaaaacacgaa-tacctacatcacctatccaagacctaatttcaacac 33283733  T
Q  127 ccataaaccccacaaccaccaagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgccgcta 226  Q
    |||| |||||||| |||||||| | ||||||| | | ||||||||||||||  || ||||||||||  |||||||||||||||| ||||||| || ||||    
T  33283734 ccatgaaccccactaccaccaaaatcaatttcgccgcctaaaacaaactctgtcgcgaacaaccacttaaaacgaaatccataagcacccattgctgcta 33283833  T
Q  227 ctcactccaaaa 238  Q
    | ||||||||||    
T  33283834 cacactccaaaa 33283845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 12296416 - 12296370
Alignment:
Q  195 aaaacgaaatccataaccacccatcgccgctactcactccaaaataa 241  Q
    ||||||| |||||||||||||||||||| |||||||  |||||||||    
T  12296416 aaaacgatatccataaccacccatcgccactactcatcccaaaataa 12296370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 17819571 - 17819673
Alignment:
Q  137 cacaaccaccaagaccaatttcacagtctaaaacaaactctaccgtgaacaaccaccgaaaacgaaatccataaccacccatcgc-cgctactcactcca 235  Q
    |||||||||||| ||||| |||||   ||||| ||||||| | ||  ||||||||| ||||||||||||||||| | ||| |||| |||| ||||| |||    
T  17819571 cacaaccaccaaaaccaacttcaccacctaaatcaaactccatcgcaaacaaccactgaaaacgaaatccataaacccccttcgctcgctgctcacccca 17819670  T
Q  236 aaa 238  Q
    |||    
T  17819671 aaa 17819673  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 33383664 - 33383700
Alignment:
Q  202 aatccataaccacccatcgccgctactcactccaaaa 238  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  33383664 aatccataaccacccatcgccactactcaccccaaaa 33383700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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