View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1776_low_3 (Length: 252)
Name: NF1776_low_3
Description: NF1776
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1776_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 2 - 237
Target Start/End: Original strand, 40811838 - 40812074
Alignment:
| Q |
2 |
atatcagacgcagacccataagccttatctgaatccatttctttcaagtctcaaaaaatcccatactagagaaatgtgttaactaaaagtcgttatcatt |
101 |
Q |
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| T |
40811838 |
atatcagacgcaaacccataagccttatatgaatccatttctttcaaatctcaaaaaatcccatactagagaaatgtgttaaccaaaagtcgttatcatt |
40811937 |
T |
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| Q |
102 |
tgatgagattcgagaaccaatagcctccaaacacaggaacataatcactagttttgtgagcaaacaactcgtcaaaatacttgtgtgccttttgttggag |
201 |
Q |
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| T |
40811938 |
tgatgagattcaagaaccaatagcctccaaacacatgaacataatcactagttttgtgagcaaacaactcgtcaaaatacttgtgtgccttttgttggag |
40812037 |
T |
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| Q |
202 |
gagtaaaaga-cctccataactattcctccgtcatct |
237 |
Q |
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| T |
40812038 |
gagtaaaagaccctccataactattcctccatcatct |
40812074 |
T |
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Back To:
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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 200
Target Start/End: Original strand, 25020349 - 25020524
Alignment:
| Q |
22 |
agccttatctgaatccatttctttcaagtctcaaaaaatcccatactagagaaatgtgttaactaaaagtcgttatcatttgatgagattcgagaaccaa |
121 |
Q |
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|||||||||||||||| ||| ||||||| || |||||||| | ||||||||||||||| | || |||||| ||||||||||||||||||| |||| ||| |
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| T |
25020349 |
agccttatctgaatccgtttgtttcaagcctaaaaaaatcttaaactagagaaatgtgtcacctgaaagtcattatcatttgatgagattcaagaatcaa |
25020448 |
T |
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| Q |
122 |
tagcctccaaacacaggaacataatcactagttttgtgagcaaacaactcgtcaaaatacttgtgtgccttttgttgga |
200 |
Q |
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|| ||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
25020449 |
ta-actcttaacacaggaac--aagcactagttttgtgagcaaacaactcgtcaaaatacttgtgttcctttttttgga |
25020524 |
T |
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