View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17770_low_1 (Length: 240)
Name: NF17770_low_1
Description: NF17770
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17770_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 50360839 - 50360960
Alignment:
| Q |
19 |
gtcatttcctttcacattgtagtgaactttttcttctcttcgtcggagaaaattgggcatacaacaacataacgaaaattagcaaaacttgttaactaac |
118 |
Q |
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| T |
50360839 |
gtcatttcctttcacattgtagtgaactttttcttctcttcgttggagaaaattgggtatacaacaacataacgaaaattagcaaaacttgttaactaac |
50360938 |
T |
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| Q |
119 |
aatatatatctaacaacctctc |
140 |
Q |
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| T |
50360939 |
aatatatatctaacaacctctc |
50360960 |
T |
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Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 50361063 - 50361139
Alignment:
| Q |
164 |
taacaaaaaccacacacacgtaaagtagaacattgtcttgtttgattgggtataacattttagtttgaagaagacat |
240 |
Q |
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| T |
50361063 |
taacaaaaaccacacacacgtaaagtagagcattgtcttgtttgattgggtataatattttagtttgaagaagacat |
50361139 |
T |
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