View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_high_13 (Length: 229)
Name: NF17771_high_13
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_high_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 32244238 - 32244454
Alignment:
| Q |
10 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
109 |
Q |
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| T |
32244238 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32244336 |
T |
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| Q |
110 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
209 |
Q |
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| T |
32244337 |
tgcctatgaattcttaatttcctacacatcacattaagatat--atgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
32244434 |
T |
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| Q |
210 |
atgactgcagttaaatgaat |
229 |
Q |
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| T |
32244435 |
atgactgcagttaaatgaat |
32244454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 32249947 - 32250163
Alignment:
| Q |
10 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
109 |
Q |
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| T |
32249947 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgct-agttcatgacattcttcaccatgca |
32250045 |
T |
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| Q |
110 |
tgcctataaattcttaatttcctacacatcacattaagatatatatgtgcacagagacatcacagagtgtatatttgttggtatctttacatatggaatc |
209 |
Q |
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| T |
32250046 |
tgcctatgaattcttaatttcctacacatcacattatgatagatatgtg--cagagacatcacagagggtatatttgttgctatcttcacatatggaatc |
32250143 |
T |
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| Q |
210 |
atgactgcagttaaatgaat |
229 |
Q |
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| T |
32250144 |
ctgactgcagttaaatgaat |
32250163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 32254767 - 32254912
Alignment:
| Q |
10 |
agaacctgtggagtggtgatttatagtaagaagagaagagtgaggaagggacacgtcacacagtgtaggttgctgagttcatgacattcttcagcatgca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
32254767 |
agaacctgtggagtggtgatttatagtaagaagagaagcgtgagaaagggacacgtcacacagtgtaggttgctaagttcatgacattcttcaccatgca |
32254866 |
T |
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| Q |
110 |
tgcctataaattcttaatttcctacacatcacattaagatatatat |
155 |
Q |
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| T |
32254867 |
tgcctatgaattcttaatttcctacacatcacattattatatatat |
32254912 |
T |
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