View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_high_15 (Length: 217)
Name: NF17771_high_15
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 10035923 - 10036120
Alignment:
| Q |
1 |
agctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgatacaggtacggttctgcacaggcgaaaatgaggcatcaatgtt |
100 |
Q |
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| T |
10035923 |
agctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgatacaggtacggttctgcacaggcgaaaatgaggcatcaatgtt |
10036022 |
T |
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| Q |
101 |
gcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaacagaagctggtgggtgcgtga |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10036023 |
gcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaacagcagctggtgggtgcgtga |
10036120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 10096291 - 10096499
Alignment:
| Q |
1 |
agctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgatacaggtacggttctgcacaggc-----------gaaaatgag |
89 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
10096291 |
agctcatggttttcgctagcatataggcgccttccttatcacgtaggcaaattctgaaacaggtaccgttctgcacaggcgaaaatgaggcgaaaatgag |
10096390 |
T |
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| Q |
90 |
gcatcaatgttgcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaacagaagctggtg |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
10096391 |
gcatcaatgttgcatttaactcgaccaggaagaggtatctgccatcgtatcaactctataggatctggtacaagcattttctcctgaacagcagctagtg |
10096490 |
T |
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| Q |
190 |
ggtgcgtga |
198 |
Q |
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||||||||| |
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| T |
10096491 |
ggtgcgtga |
10096499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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