View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_high_5 (Length: 461)
Name: NF17771_high_5
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 49698816 - 49699262
Alignment:
| Q |
1 |
caaactccgtcgaagaaccatctcccccaatgaccgtcgctacaggtatgctt-gttattaatttttgttatataattcttatatctgcgtgaaaccgta |
99 |
Q |
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| T |
49698816 |
caaactccgtcgaagaaccatctcccccaatgaccgtcgctacaggtatgcttcgttattaatttttgttatataattcttatatctgcgtgaaaccgta |
49698915 |
T |
|
| Q |
100 |
taaactaatcattttgttcttaattagtaagttaatttcttgnnnnnnnnnggcatgcagatggtggcagatgtttttggtggtgttagtgttctacact |
199 |
Q |
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| T |
49698916 |
taaactaatcattttgttcttaattagtaagttaatttcttgttttttt--ggcatgcagatggtggcagatgtttttggtggtgttagtgttctacact |
49699013 |
T |
|
| Q |
200 |
gcatgggtgtcaccatttgaattcgggttcttgaatgaacctttgagacctctttcaattactgataatgttgtgaatataatatttttctttgatattt |
299 |
Q |
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| T |
49699014 |
gcatgggtgtcaccatttgaattcgggttcttgaatgaacctttgagacctctttcgattactgataatgttgtgaatataatatttttctttgatattt |
49699113 |
T |
|
| Q |
300 |
ggttaactttctttgttgctatctttgtctatacttcctatttgcttgtggattaccatgggcctattgcgaggatatatctaataacatggtttttatt |
399 |
Q |
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|||||||||||||||||||| || || | | ||| | ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||| |
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| T |
49699114 |
ggttaactttctttgttgcttactatgacaaaactacgtatttgcttgtggatagccatgggcctattgcgaggagatatctaagaacatggtttctatt |
49699213 |
T |
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| Q |
400 |
ttatctcgtttcccctattccttatgaactcgcccactgattatttcct |
448 |
Q |
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| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
49699214 |
tgatctcgtttccactattccttatgaactcgcccacagattatttcct |
49699262 |
T |
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