View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_high_8 (Length: 348)
Name: NF17771_high_8
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 21 - 341
Target Start/End: Original strand, 30271066 - 30271386
Alignment:
| Q |
21 |
tgtgacaataaaagtcgaaactggtcgaataagtaaaacttgatgcaatttgtatataggcaacacattgctttgaaaccaaatagattaagataacagt |
120 |
Q |
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| T |
30271066 |
tgtgacagtaagagtcgaaactgttccaataagtaaaacttgatgcaatttgtatataggcaacacattgctttgaaaccaaatagattaagataacagt |
30271165 |
T |
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| Q |
121 |
tcaaattacagaattccaaatgatacaagatgcaatacttatttaaagccttataattatattatatagcatcatttcattgccccagataaataataca |
220 |
Q |
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| T |
30271166 |
tcaaattacagaattccaaatgatacaagatgcaatacttatttaaagccttataattatattatatagcatcatttcattgccccagataaataataca |
30271265 |
T |
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| Q |
221 |
gcaggcgaattcttcattcatgttaattattatcttcattctagcacagtcgcttcgtgccacagctcaaactagctctgaatggcaacctcaactggag |
320 |
Q |
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| T |
30271266 |
gcaggcgaattcttcattcatgttaattattatcttcattctagcacagtcgcttcgtgccacagctcaaactagctctgaatggcaacctcaactggag |
30271365 |
T |
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| Q |
321 |
aagcttccaatagtataatct |
341 |
Q |
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| T |
30271366 |
aagcttccaatggtataatct |
30271386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 29361115 - 29360794
Alignment:
| Q |
19 |
ggtgtgacaataaaagtcgaaactggtcgaataagtaaaacttgatgcaatttgtatataggcaacacattgctttgaaaccaaatagattaagataaca |
118 |
Q |
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|||||||||| |||||| | |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29361115 |
ggtgtgacaacaaaagttgcaactggtccaataaataaaacttaatgcaatttgtatataggcaacacattgctttgaaaccaaatcgattaagataaca |
29361016 |
T |
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| Q |
119 |
gttcaaattacagaattccaaatgatacaagatgcaatacttatttaaagccttataattatattatatagcatcatttcattgccccagat-aaataat |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
29361015 |
gttcaaattacagaattcaaaatgatacaagatgcaatacttatttaaagcct--taattatattatatagcatcatttcattgccccagataaaataat |
29360918 |
T |
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| Q |
218 |
acagcaggcgaattcttcattcatgttaattattatcttcattctagcacagtcgcttcgtgccacagctcaaactagctctgaatggcaacctcaactg |
317 |
Q |
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||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||| ||||||||||||||||||||||| | |
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| T |
29360917 |
acagcaggcaaattcttcattcatgttaattattatcttcgttctagcacagttgcttcttgccgcagctcaacctagctctgaatggcaacctcaatag |
29360818 |
T |
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| Q |
318 |
gagaagcttccaatagtataatct |
341 |
Q |
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|||||||||||| | ||||||||| |
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| T |
29360817 |
gagaagcttccagtggtataatct |
29360794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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