View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17771_low_10 (Length: 402)
Name: NF17771_low_10
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Complemental strand, 7557135 - 7556767
Alignment:
| Q |
18 |
ataaaaagattatttcattcataattcatatcccaatctaaacaactattgaatcaatatgcactaagagatctcgtactcgtgcacaatgcatgcacaa |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| |
|
|
| T |
7557135 |
ataaaaagattttttcattcataattcatatcccaatctaaacaactattgaatcaatatgcacaaagagatctcgtgctcgtgcacaatacatgcacaa |
7557036 |
T |
|
| Q |
118 |
atgtctagttcaatattttggactcctaactctttctaaccaagtaatagcttataataaatcatatgcctcaatctctttgggtgacaaagttgcaaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7557035 |
atgtctagttcaatattttggactcctaactctttccaaccaagtaatagcttataataaatcatatgcctcaatctctttgggtgacaaagttgcaaac |
7556936 |
T |
|
| Q |
218 |
ctnnnnnnngttttatcttgaacgagttcccctttatcattttgcatttgagtatatattgatcactagattaacagtaaaataaacaaaaatatattgt |
317 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7556935 |
ctaaaaaaagttttatcttgaacgagttcccctttatcattttgcatttgagtatatattgatcactagattaacagtaaaataaacaaaaatatattgt |
7556836 |
T |
|
| Q |
318 |
tggactttagatatgtcccacttggaataagaatactcagcttcataccctgtatatggagaatttgag |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7556835 |
tggactttagatatgtcccacttggaataagaatactcagcttcataccctgtatatggagaatttgag |
7556767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University