View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_low_12 (Length: 324)
Name: NF17771_low_12
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 306
Target Start/End: Original strand, 35970844 - 35971133
Alignment:
| Q |
9 |
agatcaagaaactatgcaaaatgtgcatcaaaataaaacttggactagnnnnnnngggactaaatctgtggctgagattctagcaaagtggaaggaatac |
108 |
Q |
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| T |
35970844 |
agatcaagaaactatgcaaaatgtgcatcaaaataaaacttggactagaaaaaaagggactaaatctgtggctgagattctagcaaagtggaaggaatac |
35970943 |
T |
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| Q |
109 |
aatgagaaactatataaagatatgacggtaagccgaagcggaaatcagggcaaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaa |
208 |
Q |
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| T |
35970944 |
aatgagaaactatataaagat--gacggtaagccgaagcggaaatcagggcaaaaggttcaaa-gaaagggtgtatgaaagggaaaggaggacctcaaaa |
35971040 |
T |
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| Q |
209 |
cccagagaataaatatagaggtgttagacaaaggacttgggggaattgggttggtgatattaggaaaccaaaaggtagtaaactttggttaggtactt |
306 |
Q |
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| T |
35971041 |
cccagagaataaatatagaggtgttagacaaag-----gggggaattgggttggtgatattaggaaaccaaaaggtagtaaactttggttaggtactt |
35971133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 67 - 308
Target Start/End: Complemental strand, 35978749 - 35978501
Alignment:
| Q |
67 |
actaaatctgtggctgagattctagcaaagtggaaggaatacaatgagaaactatat------aaagatatgacggtaagccgaagcggaaatcag-ggc |
159 |
Q |
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| T |
35978749 |
actaaatctgtggctgagactctagcaaaatggaaggaatacaatgagaagctttatgctggtaaagat--gatggtaaaccaaagcgtaaagcaccggc |
35978652 |
T |
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| Q |
160 |
aaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattgggt |
259 |
Q |
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| T |
35978651 |
taaaggttcaaa-gaaagggtgtatgaaaggtaaaggaggacctcaaaactcggagaataagtatcgaggtgttagacagaggacttgggggaaatgggt |
35978553 |
T |
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| Q |
260 |
tggtgatattaggaaaccaaa---aggtagtaaactttggttaggtactttt |
308 |
Q |
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| T |
35978552 |
tgctgagattagggaaccaaatagaggaagtagactttggttaggtactttt |
35978501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 35975625 - 35975510
Alignment:
| Q |
159 |
caaaaggttcaaaagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattggg |
258 |
Q |
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| T |
35975625 |
caaaaggttcaaa-gaaaggatgtatgaaagggaaaggaggacctcaaaactcaga--ataaatatagaggtgtcagacaaaggacttgggggaaatggg |
35975529 |
T |
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| Q |
259 |
ttggtgatattaggaaacc |
277 |
Q |
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| T |
35975528 |
tggctgaaattagggaacc |
35975510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 37650927 - 37651016
Alignment:
| Q |
171 |
aagaaaaggtgtatgaaagggaaaggaggacctcaaaacccagagaataaatatagaggtgttagacaaaggacttgggggaattgggtt |
260 |
Q |
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|||||| ||||||||||||| |||||||| || ||||| | | ||| ||||||||||| |||||||||||||||||||| |||||| |
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| T |
37650927 |
aagaaagggtgtatgaaaggtaaaggagggccggaaaactcccggtgtaattatagaggtgtgagacaaaggacttgggggaaatgggtt |
37651016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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