View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_low_13 (Length: 324)
Name: NF17771_low_13
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 39576110 - 39576416
Alignment:
| Q |
1 |
cctcctcgaacaccagattcttcgtaagagaaacgtgtcattgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaacgcaa |
100 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39576110 |
cctcctcgaacaccagattctttgtaagagaaatgtggcattgaatcagggattaaatgaaccggaagcataaagagttctattgcattaacaaacgcaa |
39576209 |
T |
|
| Q |
101 |
atgatgatgtttgaggtgtgaatatgattttgaatctttttctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgtt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39576210 |
atgatgatgtttgaggtgtgaatatgattttgaatctttttctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgtt |
39576309 |
T |
|
| Q |
201 |
gaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccata |
300 |
Q |
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| T |
39576310 |
gaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccata |
39576409 |
T |
|
| Q |
301 |
taagtgt |
307 |
Q |
| |
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||||||| |
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| T |
39576410 |
taagtgt |
39576416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 42 - 307
Target Start/End: Original strand, 39521506 - 39521771
Alignment:
| Q |
42 |
tgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatcttttt |
141 |
Q |
| |
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|||||| ||||||||||||| || |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
39521506 |
tgaatcggggattaaatgaagagggagcataaagagttcaattgcattaacaaacgcaaatgatgatgtttgaggtgtgaaagtgattgtgaatcttttt |
39521605 |
T |
|
| Q |
142 |
ctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttga |
241 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||| |
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| T |
39521606 |
ctgatgattttaacgtaatactcttttactaaaggagagttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaactgaaacggtga |
39521705 |
T |
|
| Q |
242 |
attttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgt |
307 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
39521706 |
attttgcagaggaaaggttagttggtgaagagaatgaaaagaaatggaaacgtaccatgtaagtgt |
39521771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 42 - 307
Target Start/End: Original strand, 39511260 - 39511525
Alignment:
| Q |
42 |
tgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatcttttt |
141 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||||||||||||| || | ||||||| ||||||||||||| ||||||||||||||||| |
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| T |
39511260 |
tgaatcagggattaaatgaacggggagcacaaagagttctattgcgttaacaaatgcgagtgatgatttttgaggtgtgaaagtgattttgaatcttttt |
39511359 |
T |
|
| Q |
142 |
ctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttga |
241 |
Q |
| |
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|| ||||||| |||||| || ||||||||||||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||| |||| ||| |
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| T |
39511360 |
ctgatgatttgaacgtagtattcttttactaaaggagagttggtggtgttttcagcgttgaaattttgtaacagaatgaaaccaggaactgaaacagtga |
39511459 |
T |
|
| Q |
242 |
attttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccatataagtgt |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||| |
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| T |
39511460 |
attttgcagtggaaagtttagttggtgtagagaatgaaaggaaatggaaacgtaccatataggtgt |
39511525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 52 - 299
Target Start/End: Original strand, 39544309 - 39544556
Alignment:
| Q |
52 |
attaaatgaaccggaagcataaagagttctattgcgttaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatctttttctaatgattt |
151 |
Q |
| |
|
|||||||||| || || ||||||||||| | ||| |||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||| ||||||| |
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| T |
39544309 |
attaaatgaagagggagaataaagagttcaaatgcattaaaaaacgcaaatgaagatgtttgaggtgtgaaagtgattgtgaatctttttctgatgattt |
39544408 |
T |
|
| Q |
152 |
taacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagt |
251 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||| |||||||||| ||||||||| || |||| ||||||||||||| |
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| T |
39544409 |
taacgtaatactcttttactaaagaagagttggtggtgttttcagagttgaaattttgtaacagaatgaaaccagggactgaaacattgaattttgcaga |
39544508 |
T |
|
| Q |
252 |
ggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccat |
299 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||| |||||| |
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| T |
39544509 |
ggaaaggttagttggtgaagagaatgaaaagaaatggaaacataccat |
39544556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 40 - 299
Target Start/End: Original strand, 39525001 - 39525260
Alignment:
| Q |
40 |
attgaatcagggattaaatgaaccggaagcataaagagttctattgcgttaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatcttt |
139 |
Q |
| |
|
||||| || |||||||||||||| || |||||||||||||||||||| ||| |||| |||||||||| | ||||||||||||| ||||||||||| ||| |
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| T |
39525001 |
attgagtcggggattaaatgaacagggagcataaagagttctattgcattagcaaaggcaaatgatgctttttgaggtgtgaacgtgattttgaattttt |
39525100 |
T |
|
| Q |
140 |
ttctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgtt |
239 |
Q |
| |
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|||| |||||||||| |||||||||||||||||||| ||| ||||||||||||| || | |||||| |||||||||| ||||||||| || |||| | | |
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|
| T |
39525101 |
ttctgatgattttaaggtaatactcttttactaaaggagagttggtggtgttttttgcatcgaaattttgtaacagaatgaaaccagggactgaaacggt |
39525200 |
T |
|
| Q |
240 |
gaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccat |
299 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
39525201 |
gaattttgcagtggaaaggttaagtggtgaagagaatgaaaagaaatggaaacgtaccat |
39525260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 70 - 307
Target Start/End: Original strand, 39580719 - 39580945
Alignment:
| Q |
70 |
ataaagagttctattgcgttaacaaacgcaaatgatgatgtttgaggtgtgaatatgattttgaatctttttctaatgattttaacgtaatactctttta |
169 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||||| | |||| ||||| | |
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|
| T |
39580719 |
ataaagagttccattgcattaacaaacgcaaatgatgaggtttgaggtgtgaaagtgattttgaatcttttacgggtgattttaaagaaatattctttaa |
39580818 |
T |
|
| Q |
170 |
ct-aaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaaccaggaacggaaatgttgaattttgcagtggaaagtttagttggtg |
268 |
Q |
| |
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| ||||| || || | ||| ||||| ||||||||| |||||| |||| ||||| ||||||||||||||||||||| ||||||||| |
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| T |
39580819 |
ttgaaagcggagtttata------tca------aaattttgtaacagagagaaacctggaaaggaaacgttgaattttgcagtggaaagattagttggta |
39580906 |
T |
|
| Q |
269 |
aagagaatgaaaagaaacggaaacgtaccatataagtgt |
307 |
Q |
| |
|
|||||||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
39580907 |
aagagaatagaaagaaatggaaacgtaccatgtaagtgt |
39580945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 126 - 299
Target Start/End: Complemental strand, 3331696 - 3331524
Alignment:
| Q |
126 |
gattttgaatctttttctaatgattttaacgtaatactcttttactaaagcagatttggtggtgttttcagcgttgaaattatgtaacagaaggaaacca |
225 |
Q |
| |
|
|||| ||||||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||| ||||||||||||||| |
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| T |
3331696 |
gattgtgaatctttttatgatgattttaacgtaatactcttttactaaaggagagttggtggtgtttttagcgtcgaaattagttaacagaaggaaaccg |
3331597 |
T |
|
| Q |
226 |
ggaacggaaatgttgaattttgcagtggaaagtttagttggtgaagagaatgaaaagaaacggaaacgtaccat |
299 |
Q |
| |
|
| ||| ||||||||||| |||||||||||||| ||| |||||||||||||||||| |||| ||||||||||||| |
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|
| T |
3331596 |
gaaacagaaatgttgaa-tttgcagtggaaaggttaattggtgaagagaatgaaaggaaatggaaacgtaccat |
3331524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 3331316 - 3331275
Alignment:
| Q |
81 |
tattgcgttaacaaacgcaaatgatgatgtttgaggtgtgaa |
122 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
3331316 |
tattgcattaacaaatgcaaatgatgatgtttgaggtgtgaa |
3331275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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