View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_low_14 (Length: 315)
Name: NF17771_low_14
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 31 - 197
Target Start/End: Complemental strand, 6602371 - 6602205
Alignment:
| Q |
31 |
ctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgc |
130 |
Q |
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| T |
6602371 |
ctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgc |
6602272 |
T |
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| Q |
131 |
tgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaagctctctcaattgttg |
197 |
Q |
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| T |
6602271 |
tgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaagctctctcaattgttg |
6602205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 31 - 182
Target Start/End: Complemental strand, 6609886 - 6609735
Alignment:
| Q |
31 |
ctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgc |
130 |
Q |
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| T |
6609886 |
ctcaactctattacaacttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgc |
6609787 |
T |
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| Q |
131 |
tgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaag |
182 |
Q |
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| T |
6609786 |
tgcttctctcttgcgccttcatttccatgattgttttgtcaatgtaattaag |
6609735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 6602130 - 6602100
Alignment:
| Q |
272 |
gtgttacatagggatgtgatggatctgtgct |
302 |
Q |
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| T |
6602130 |
gtgttacatagggatgtgatggatctgtgct |
6602100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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