View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_low_19 (Length: 244)
Name: NF17771_low_19
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39521367 - 39521128
Alignment:
| Q |
1 |
ttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgata |
100 |
Q |
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| T |
39521367 |
ttatcgagagaatggttagcagatgacagttatgtaactaatccacaaaacgctaagaatcgctcctttgacgttcatattccacgcactgcaaatgata |
39521268 |
T |
|
| Q |
101 |
catctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagtagcataagttggagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
39521267 |
catctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagcaacataagttggagtgt |
39521168 |
T |
|
| Q |
201 |
tcctgtagagaagaacgtagatcatttacttaggtttcat |
240 |
Q |
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| T |
39521167 |
tcctgtagagaagaacgtagatcatttacttaggtttcat |
39521128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39576009 - 39575770
Alignment:
| Q |
1 |
ttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgata |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||| |
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| T |
39576009 |
ttatcgagagaatggttaccagatgacagatatgtaactaatctacaaaacgctaagaattgctcctttgacggtgatattccacgcactgcaaatgata |
39575910 |
T |
|
| Q |
101 |
catctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttctagtagcataagttggagtgt |
200 |
Q |
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| T |
39575909 |
cgtctgatggtccaaattcaaatcaatatattgctccagatattgtttataaaactggcaaagagagtattaacggttctagcagcataagttggagtgt |
39575810 |
T |
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| Q |
201 |
tcctgtagagaagaacgtagatcatttacttaggtttcat |
240 |
Q |
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| T |
39575809 |
tcctgtagagaagaacgtagatcattttcttaggtttcat |
39575770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 39544163 - 39543997
Alignment:
| Q |
1 |
ttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgata |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| | ||||| | || ||| ||||||||||||| ||| |
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| T |
39544163 |
ttatcgagagaatggttaccagatgacagttatataactaatccacaaaacgctaagaatggttcctttgcagatgaaattaaacgcactgcaaataata |
39544064 |
T |
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| Q |
101 |
catctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagag |
167 |
Q |
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| T |
39544063 |
catatgaaggtccaaattcaaatatatatattgctccggacgctgtttatgaaactgccaaagagag |
39543997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 232
Target Start/End: Complemental strand, 39524866 - 39524630
Alignment:
| Q |
2 |
tatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatac |
101 |
Q |
| |
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|||| ||||||||||||||||||||||| ||| ||||| ||| ||||||||||||||| | ||||| |||| |||| |||||||||||||||| |
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| T |
39524866 |
tatcaagagaatggttaccagatgacagatatataactgatccccaaaacgctaagaatggttcctttgaaggtgatattaaacgcactgcaaatgatga |
39524767 |
T |
|
| Q |
102 |
atctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagtattaacggttcta---gt---agcataagttgg |
195 |
Q |
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| T |
39524766 |
atctgttgattcaaattcaaataaatacataggtccagatattgtttataaaactgccaaagtgagtgttaatggttcaatcggtttaaacataagttgg |
39524667 |
T |
|
| Q |
196 |
agtgttcctgtagagaagaacgtagatcatttactta |
232 |
Q |
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| T |
39524666 |
agtgttcctgtggagaagaatatagatcatttcctta |
39524630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 39580543 - 39580415
Alignment:
| Q |
13 |
tggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgatacatctgatggtc |
112 |
Q |
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|||||||||||||||||||| | ||||||| ||| |||||||||||| |||||||| |||| |||| |||||||||| |||| ||||||||||| |
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| T |
39580543 |
tggttaccagatgacagttacatcactaatccacataacgctaagaatggtttctttggaggtgatattaaacgcactgcaggtgatgaatctgatggtc |
39580444 |
T |
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| Q |
113 |
caaattcaaatcaatatattgctccagac |
141 |
Q |
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| T |
39580443 |
caaattcaaatatacatattggtccagac |
39580415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 39511121 - 39510957
Alignment:
| Q |
1 |
ttatcgagagaatggttaccagatgacagttatgtaactaatctacaaaacgctaagaatcacttctttggcggtggtattccacgcactgcaaatgata |
100 |
Q |
| |
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||||| ||||||||||||| ||||||||| || ||||||||| |||||| || |||| | | |||||| || |||| || | ||||||||||| |
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| T |
39511121 |
ttatcaagagaatggttacgagatgacagatacataactaatccacaaaatgcgaagattggttcctttgg---tgatattaaacacgctgcaaatgatg |
39511025 |
T |
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| Q |
101 |
catctgatggtccaaattcaaatcaatatattgctccagacagggtttatcaaactggcaaagagagt |
168 |
Q |
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| T |
39511024 |
aatctgatggtccaaattcaagtatatatattggtccagatattgtttataaaactggccaagagagt |
39510957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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