View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_low_2 (Length: 619)
Name: NF17771_low_2
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 19 - 501
Target Start/End: Complemental strand, 6602681 - 6602205
Alignment:
| Q |
19 |
cactatactaatttggagactatttttaatagactcatgcatcatcttgccacttagagcagaaattttggacttgtaacaagcttaatagataaggaca |
118 |
Q |
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| T |
6602681 |
cactatactaatttggagactatttttaatatactcatgcatcatcttgccacttagagcagaaattttggacttgtaacaaacttaacagataaggaca |
6602582 |
T |
|
| Q |
119 |
atcatagtggctctgccactctataaaaactatgttaacaattaacaagtgctattttttccttctataaattgtttcatcttacaacttatattgtcac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
6602581 |
atcatagtggctctgccactctataaaaactatgttaacaattaacaagtgctattttttccttctataaattgtttcagcttacaacttat--tgtcac |
6602484 |
T |
|
| Q |
219 |
acaaagttctaattaattttgtcaacatatatagtttcaactcatggagtgtgtctataacaaacatgtttttgttttcatgttttgtcttgtgtttctt |
318 |
Q |
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|||||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6602483 |
acaaagttctaattaagtttgtcaacata----gtttcagctcatggagtgtgtctctaacaaacatgtttttattttcatgttttgtcttgtgtttctt |
6602388 |
T |
|
| Q |
319 |
actccacttgtgtgctctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagcta |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602387 |
actccacttgtgtgctctcaactatattacaatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagcta |
6602288 |
T |
|
| Q |
419 |
atgattctaggattgctgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaagctctctcaattgttg |
501 |
Q |
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| T |
6602287 |
atgattctaggattgctgcttctctcttgcgccttcatttccatgattgttttgttaatgtaattaagctctctcaattgttg |
6602205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 249 - 486
Target Start/End: Complemental strand, 6609972 - 6609735
Alignment:
| Q |
249 |
atagtttcaactcatggagtgtgtctataacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccacttgtgtgctctcaactatattac |
348 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
6609972 |
atagtttcaactcatggagtgtgtctctaacaaacatgtttttgttttcatgttttgtcttgtgtttcttactccaaatgtgtgctctcaactctattac |
6609873 |
T |
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| Q |
349 |
aatttctataacagaacttgtccaaatctgaacaaaattgttaaagacaatatcttgtcagctatagctaatgattctaggattgctgcttctctcttgc |
448 |
Q |
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| T |
6609872 |
aacttctacattagaacttgtccaaacctgaacagaattgttaaaaataatatcttgtcagctatagctaatgactcaaggattgctgcttctctcttgc |
6609773 |
T |
|
| Q |
449 |
gccttcatttccatgattgttttgttaatgtaattaag |
486 |
Q |
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| T |
6609772 |
gccttcatttccatgattgttttgtcaatgtaattaag |
6609735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 112 - 233
Target Start/End: Complemental strand, 6610139 - 6610017
Alignment:
| Q |
112 |
aaggacaatcatagtggctctgccactct--ataaaaactatgttaacaattaacaagtg-ctattttttccttctataaattgtttcatcttacaactt |
208 |
Q |
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||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||| | ||||||| ||||||||||| ||||| |||||| || |
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| T |
6610139 |
aaggacaattatagtggctctgccactctcaataaaaactattgtaacaactaacaagtgttttttttttctttctataaattatttcagcttacagct- |
6610041 |
T |
|
| Q |
209 |
atattgtcacacaaagttctaatta |
233 |
Q |
| |
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|||||||||||| | ||||||||| |
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| T |
6610040 |
-tattgtcacacacaattctaatta |
6610017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 576 - 606
Target Start/End: Complemental strand, 6602130 - 6602100
Alignment:
| Q |
576 |
gtgttacatagggatgtgatggatctgtgct |
606 |
Q |
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| T |
6602130 |
gtgttacatagggatgtgatggatctgtgct |
6602100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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