View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_low_24 (Length: 213)
Name: NF17771_low_24
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 15 - 184
Target Start/End: Original strand, 55635634 - 55635803
Alignment:
| Q |
15 |
atgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaat |
114 |
Q |
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| T |
55635634 |
atgaatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccaattcttctatccctgttcaaccaat |
55635733 |
T |
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| Q |
115 |
tttctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttc |
184 |
Q |
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| T |
55635734 |
tttctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttc |
55635803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 54861927 - 54861762
Alignment:
| Q |
18 |
aatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaatttt |
117 |
Q |
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|||||||| |||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||| ||| |||||| | |||||| ||| ||||| || |
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| T |
54861927 |
aatgacaatatccaagcggtgatcgaggcaggtgtatgtggcagactggtgcagctccttctgtaagtaccaattcttat-tccctggtcagccaatatt |
54861829 |
T |
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| Q |
118 |
ctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttc |
184 |
Q |
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| T |
54861828 |
ctattgcaattattgattattttggctctaaatatatgtgcatgttttgaaggcacccatctccttc |
54861762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 184
Target Start/End: Complemental strand, 52985617 - 52985453
Alignment:
| Q |
18 |
aatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaatttt |
117 |
Q |
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| T |
52985617 |
aatgacataatccaagaggtgattgaggcaggtatatgtggcagactggtggagctacttctgtaagtaccaatt-ttcgatccctggtcaaccaatttt |
52985519 |
T |
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| Q |
118 |
ctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttc |
184 |
Q |
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| T |
52985518 |
-tgttgcaattattgattattttggctctaaatgtatgtgcatgttttgaaggcacccatctccttc |
52985453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 55665319 - 55665147
Alignment:
| Q |
18 |
aatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaatttt |
117 |
Q |
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| T |
55665319 |
aatgacaaaatccaagctgtgatcgaggcaggtgtatgtggcagactggtggagcttcttcagtaagtaccaatttttctatccctggtgcaccaataat |
55665220 |
T |
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| Q |
118 |
ctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttctgtgtt |
190 |
Q |
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| T |
55665219 |
ttgtttcaattattgattattttggctctaaatgtatgcgcatgttttgaaggtacccatctccttcagtgtt |
55665147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 54627424 - 54627577
Alignment:
| Q |
27 |
atccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaattttctattgcaa |
126 |
Q |
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|||||||| |||||| | |||||||||||||| ||||||||| | |||||||||||| ||| |||||| ||||||| ||||||||| ||||||||||| |
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| T |
54627424 |
atccaagcggtgatcgaggcaggtgtatgtggtagactggtgcaaatccttctgtaagtaccaattcttatatccctcgtcaaccaatgttctattgcaa |
54627523 |
T |
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| Q |
127 |
ttattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctc |
180 |
Q |
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| T |
54627524 |
gtattgattattttggctctaaatgtatgtgcatgttttgaagggaaccatctc |
54627577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 55659104 - 55658932
Alignment:
| Q |
18 |
aatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaatttt |
117 |
Q |
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|||||| |||||||||| || ||| | || || |||||| ||||| || ||||||||| |||||| ||| | |||| |||||||| |||||||||||| |
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| T |
55659104 |
aatgacgaaatccaagcggtaatcgaggctggcatatgtgatagactagtagagctccttttgtaagtaccaaatcttatatccctggtcaaccaatttt |
55659005 |
T |
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| Q |
118 |
ctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttctgtgtt |
190 |
Q |
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| T |
55659004 |
ctgttgcaattgttgattattttggctctaaatctacgcgcatgttttgaaggcgcccgtctccttcagtgtt |
55658932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 3671753 - 3671694
Alignment:
| Q |
18 |
aatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctcctt |
77 |
Q |
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||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||| |
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| T |
3671753 |
aatgacaaaatccaagcggtgatcgaggcaggtgtttgtggcagactggtggagctcctt |
3671694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 9889915 - 9890070
Alignment:
| Q |
18 |
aatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaatttt |
117 |
Q |
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||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| | |
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| T |
9889915 |
aatgacaaaatccaagcggtgatcgaggcaggtgtatgtggcagactggtggagctccttttgtaagtaccaattcttctatccctg-----------ct |
9890003 |
T |
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| Q |
118 |
ctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttc |
184 |
Q |
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|| || |||||||| |||| |||| ||||||||| ||||| |||||||||||| |||| |||||||| |
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| T |
9890004 |
ctgtttcaattatttattaatttggctctaaatgcatgtgcatgttttgaaggaacccttctccttc |
9890070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 184
Target Start/End: Original strand, 13401816 - 13401982
Alignment:
| Q |
18 |
aatgacaaaatccaagcagtgatcaacgcaggtgtatgtggcagactggtggagctccttctgtaagcaccgattcttctatccctgttcaaccaatttt |
117 |
Q |
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||||||||||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||| || | |||||| ||||| | | || |||| | | |
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| T |
13401816 |
aatgacaaaatccaagcggtgattgaggcaggtgtatgtggcagactagtgcagctccttctgtgagtaacgattcatctattcttatttgaccagtgat |
13401915 |
T |
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| Q |
118 |
ctattgcaattattgattattttgcctctaaatgtatgtgaatgttttgaaggcacccatctccttc |
184 |
Q |
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| T |
13401916 |
cttttgcagttattgattgttttgactctaaatttatatgcatgtgttgtaggcacccatctccttc |
13401982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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