View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17771_low_3 (Length: 572)

Name: NF17771_low_3
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17771_low_3
NF17771_low_3
[»] chr6 (17 HSPs)
chr6 (20-562)||(12731137-12731693)
chr6 (20-179)||(24110039-24110196)
chr6 (45-141)||(6643329-6643429)
chr6 (47-182)||(11650916-11651056)
chr6 (95-176)||(1473594-1473675)
chr6 (110-185)||(4033086-4033161)
chr6 (42-180)||(5706640-5706783)
chr6 (23-93)||(1473618-1473688)
chr6 (20-61)||(31946916-31946957)
chr6 (110-182)||(17389991-17390063)
chr6 (108-152)||(34093904-34093948)
chr6 (20-87)||(3150209-3150276)
chr6 (106-176)||(17600695-17600765)
chr6 (114-182)||(4483341-4483407)
chr6 (20-93)||(28865410-28865483)
chr6 (114-183)||(4032957-4033028)
chr6 (94-130)||(9358244-9358280)
[»] chr1 (30 HSPs)
chr1 (20-180)||(7444281-7444445)
chr1 (45-164)||(2542693-2542816)
chr1 (20-180)||(34437598-34437761)
chr1 (20-152)||(34437601-34437736)
chr1 (20-159)||(31970116-31970259)
chr1 (43-180)||(731305-731446)
chr1 (53-133)||(23317942-23318026)
chr1 (108-183)||(49822620-49822695)
chr1 (20-143)||(38663651-38663778)
chr1 (23-185)||(40668932-40669096)
chr1 (109-181)||(939306-939380)
chr1 (43-134)||(39131584-39131679)
chr1 (107-160)||(16661810-16661863)
chr1 (45-151)||(45563091-45563201)
chr1 (95-178)||(21281454-21281538)
chr1 (20-177)||(49403472-49403633)
chr1 (108-142)||(2542794-2542828)
chr1 (24-66)||(45563159-45563201)
chr1 (45-143)||(939359-939461)
chr1 (112-180)||(38948188-38948254)
chr1 (112-152)||(34783443-34783483)
chr1 (45-134)||(40374058-40374150)
chr1 (95-151)||(45215332-45215387)
chr1 (93-152)||(45215404-45215463)
chr1 (114-176)||(15366480-15366542)
chr1 (20-81)||(21281477-21281539)
chr1 (95-176)||(38663630-38663711)
chr1 (112-180)||(7444256-7444324)
chr1 (109-181)||(31851952-31852023)
chr1 (20-80)||(31970120-31970180)
[»] chr5 (26 HSPs)
chr5 (43-180)||(3907631-3907770)
chr5 (20-183)||(42420017-42420184)
chr5 (20-183)||(36059181-36059346)
chr5 (45-180)||(4190084-4190225)
chr5 (94-176)||(22399749-22399831)
chr5 (23-133)||(25545240-25545354)
chr5 (93-180)||(33029469-33029556)
chr5 (45-180)||(41169415-41169554)
chr5 (20-142)||(3907656-3907780)
chr5 (107-160)||(28907363-28907416)
chr5 (107-160)||(28943758-28943811)
chr5 (95-141)||(25545297-25545343)
chr5 (94-143)||(33029572-33029621)
chr5 (108-168)||(17474865-17474925)
chr5 (108-142)||(4190072-4190106)
chr5 (95-157)||(32309676-32309738)
chr5 (98-151)||(13122043-13122096)
chr5 (95-180)||(27195331-27195415)
chr5 (20-93)||(32309663-32309736)
chr5 (108-137)||(35244858-35244887)
chr5 (109-141)||(3771259-3771291)
chr5 (106-134)||(22399860-22399888)
chr5 (112-180)||(35244916-35244984)
chr5 (71-180)||(40927657-40927770)
chr5 (108-180)||(42249385-42249457)
chr5 (116-160)||(42420012-42420056)
[»] chr4 (32 HSPs)
chr4 (20-152)||(21433876-21434012)
chr4 (20-180)||(16457920-16458083)
chr4 (20-155)||(9023910-9024049)
chr4 (20-180)||(3688570-3688735)
chr4 (23-143)||(31758690-31758814)
chr4 (23-167)||(2247568-2247715)
chr4 (20-130)||(33414003-33414117)
chr4 (93-184)||(41840564-41840655)
chr4 (23-141)||(19382300-19382417)
chr4 (20-182)||(45653986-45654150)
chr4 (107-171)||(7403174-7403238)
chr4 (20-152)||(52374917-52375053)
chr4 (20-151)||(15134567-15134702)
chr4 (108-181)||(15134541-15134614)
chr4 (95-152)||(31758690-31758747)
chr4 (95-152)||(33414006-33414063)
chr4 (95-133)||(993239-993277)
chr4 (95-176)||(21433952-21434033)
chr4 (106-143)||(38036249-38036286)
chr4 (108-172)||(34397491-34397554)
chr4 (93-141)||(38036312-38036360)
chr4 (109-169)||(42516538-42516598)
chr4 (20-93)||(993219-993290)
chr4 (94-160)||(16577248-16577314)
chr4 (106-151)||(2324762-2324807)
chr4 (95-152)||(3688573-3688630)
chr4 (108-141)||(16457934-16457967)
chr4 (95-152)||(19382300-19382357)
chr4 (106-143)||(41840682-41840719)
chr4 (108-185)||(52374887-52374964)
chr4 (94-169)||(1338419-1338492)
chr4 (20-80)||(16577253-16577313)
[»] chr7 (30 HSPs)
chr7 (20-182)||(5443503-5443668)
chr7 (20-182)||(5452548-5452713)
chr7 (23-182)||(2276254-2276413)
chr7 (20-152)||(49106909-49107044)
chr7 (20-180)||(12275715-12275877)
chr7 (23-180)||(3235534-3235695)
chr7 (95-182)||(49106984-49107071)
chr7 (94-182)||(47497778-47497866)
chr7 (20-141)||(2276277-2276402)
chr7 (95-178)||(12275817-12275900)
chr7 (109-176)||(26647783-26647850)
chr7 (95-176)||(26862992-26863073)
chr7 (110-179)||(31042115-31042184)
chr7 (43-138)||(640902-641001)
chr7 (95-176)||(24516537-24516616)
chr7 (20-141)||(40134402-40134523)
chr7 (23-141)||(26862927-26863049)
chr7 (109-176)||(5443622-5443689)
chr7 (109-176)||(5452667-5452734)
chr7 (20-148)||(10056630-10056762)
chr7 (94-153)||(18089780-18089839)
chr7 (95-130)||(36129094-36129129)
chr7 (94-152)||(7017164-7017222)
chr7 (94-152)||(7032522-7032580)
chr7 (23-130)||(24516559-24516670)
chr7 (95-141)||(46074134-46074180)
chr7 (95-152)||(11201296-11201353)
chr7 (25-142)||(36992827-36992949)
chr7 (108-140)||(29356932-29356964)
chr7 (54-179)||(45200484-45200612)
[»] chr3 (30 HSPs)
chr3 (20-143)||(3901511-3901632)
chr3 (53-180)||(14345126-14345257)
chr3 (20-182)||(36480680-36480846)
chr3 (20-142)||(31205369-31205495)
chr3 (20-152)||(3901499-3901629)
chr3 (20-182)||(51541218-51541384)
chr3 (27-152)||(29955045-29955174)
chr3 (27-152)||(30004199-30004328)
chr3 (45-180)||(35357292-35357431)
chr3 (95-171)||(29955022-29955098)
chr3 (95-171)||(30004176-30004252)
chr3 (108-176)||(26986272-26986340)
chr3 (106-176)||(36007445-36007515)
chr3 (100-180)||(1458515-1458593)
chr3 (20-130)||(11532460-11532574)
chr3 (46-152)||(32881023-32881133)
chr3 (95-176)||(36480786-36480867)
chr3 (54-152)||(40554072-40554174)
chr3 (108-143)||(49750614-49750649)
chr3 (95-141)||(11532514-11532560)
chr3 (112-158)||(39285944-39285990)
chr3 (70-153)||(40117776-40117863)
chr3 (95-168)||(19560616-19560689)
chr3 (95-140)||(35357396-35357441)
chr3 (109-141)||(3300737-3300769)
chr3 (20-152)||(4276977-4277118)
chr3 (94-130)||(19158684-19158720)
chr3 (107-171)||(37189235-37189299)
chr3 (57-142)||(45332557-45332646)
chr3 (23-83)||(52596089-52596148)
[»] chr2 (34 HSPs)
chr2 (20-125)||(42094233-42094341)
chr2 (53-160)||(9430170-9430281)
chr2 (20-185)||(16209375-16209544)
chr2 (29-177)||(33069145-33069297)
chr2 (45-182)||(37810119-37810260)
chr2 (20-152)||(42251163-42251299)
chr2 (45-134)||(3466408-3466501)
chr2 (20-152)||(25666801-25666937)
chr2 (20-160)||(42029342-42029486)
chr2 (29-152)||(33171608-33171735)
chr2 (23-182)||(45300340-45300503)
chr2 (20-142)||(44247538-44247664)
chr2 (34-135)||(4237270-4237375)
chr2 (23-140)||(18719734-18719854)
chr2 (35-143)||(1469751-1469863)
chr2 (109-184)||(44487245-44487320)
chr2 (109-179)||(41496035-41496105)
chr2 (95-176)||(42094282-42094362)
chr2 (19-91)||(2683444-2683516)
chr2 (112-180)||(12703568-12703636)
chr2 (93-152)||(16209378-16209437)
chr2 (109-192)||(35715066-35715149)
chr2 (73-176)||(12779481-12779587)
chr2 (22-66)||(33069169-33069213)
chr2 (27-152)||(37810153-37810282)
chr2 (70-141)||(17383774-17383849)
chr2 (95-176)||(18719712-18719791)
chr2 (20-66)||(42029435-42029481)
chr2 (20-93)||(1930670-1930743)
chr2 (108-181)||(3466479-3466552)
chr2 (95-132)||(44487176-44487213)
chr2 (70-171)||(15194519-15194624)
chr2 (23-79)||(35715053-35715109)
chr2 (108-152)||(45300459-45300503)
[»] chr8 (23 HSPs)
chr8 (20-143)||(34504389-34504516)
chr8 (45-180)||(35586429-35586567)
chr8 (29-171)||(27072825-27072970)
chr8 (20-180)||(2288599-2288763)
chr8 (20-179)||(40694589-40694752)
chr8 (20-152)||(40175896-40176033)
chr8 (20-152)||(8402483-8402615)
chr8 (107-180)||(20271104-20271177)
chr8 (107-180)||(21057732-21057805)
chr8 (94-176)||(36009900-36009982)
chr8 (33-179)||(40696201-40696351)
chr8 (20-141)||(26018476-26018601)
chr8 (108-170)||(2288584-2288646)
chr8 (95-181)||(38357543-38357629)
chr8 (95-180)||(42072637-42072720)
chr8 (95-176)||(40566535-40566616)
chr8 (20-80)||(27072894-27072954)
chr8 (43-93)||(2478484-2478534)
chr8 (70-133)||(4994205-4994272)
chr8 (93-143)||(30262770-30262820)
chr8 (31-126)||(42072671-42072770)
chr8 (23-176)||(8402483-8402636)
chr8 (95-152)||(38835003-38835060)
[»] scaffold0137 (1 HSPs)
scaffold0137 (70-152)||(8231-8316)
[»] scaffold0003 (1 HSPs)
scaffold0003 (20-132)||(136344-136460)
[»] scaffold0620 (1 HSPs)
scaffold0620 (108-152)||(9238-9282)
[»] scaffold0015 (1 HSPs)
scaffold0015 (95-152)||(201036-201093)


Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 562
Target Start/End: Complemental strand, 12731693 - 12731137
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaa 115  Q
    |||||||| ||| ||||||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||    ||| |||| ||||||||||    
T  12731693 aacacacattttccaacacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtcccaaataaatttgatgggtctcatgtgaa 12731594  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatatacatttaagctaacttacacctcgggatgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12731593 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatgtgttgctaacatttctcgtatacatttaagctaacttacacctcgggatgaa 12731494  T
Q  216 agcatgttagttgtgccgctggaatgaaaccttcagtcgagcgtaatccacatatttgaaaatcctccactcgaaagcctccccttcagcgcaagtcaaa 315  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||    
T  12731493 agcatgttagttgtgccgctggaatgaaaccttcagtcgagcataatccacatatttgaagatcctccactcggaagcctccccttcagtgcaagtcaaa 12731394  T
Q  316 catccagagttagttccatcaaatgcacatcagaccataccctcttgtgcaagtgcatttgatatctacattcattagatgaagactagtcaacttcgtc 415  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  12731393 tgtccagagttagttccatcaaatgcacatcagaccataccctcttgtgcaagtgcatttgatatctacatccaatagatgaagactagtcaacttcgtc 12731294  T
Q  416 aac---------atgtcgaatgtaaaacgtgcacgaagactctgcttgtaataaatctgataattttgtctagtcaagagtaatcgtaaccaaccctaat 506  Q
    |||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12731293 aacatgatcaatatgtcgaatgtaaaacgtgcacgaagactctgcttgtaataaatctgataattttgtctggtcaagagtaatcgtaaccaaccctaat 12731194  T
Q  507 gtataatctgatggtctaa-ctcaccacaatacatcctctattttttagcgcctatg 562  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12731193 gtataatctgatggtctaacctcaccacaatacatcctctattttttagcgcctatg 12731137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 24110196 - 24110039
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaatttggtgggcctcatgtgaatttt 119  Q
    |||||||||||||||| | ||  | ||| || |||||||||| |||| | |  | ||||| |||||  |||| |||||||||||  | ||| ||||||||    
T  24110196 aacacacacttttcaatatactctctttaattggttaaaattcacatgggt--ctccaaaccatgtatgtcctaaatttggtggatcacatatgaatttt 24110099  T
Q  120 aaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttct 179  Q
    ||||||||||||||| |||||||| || ||| | ||||||||| |||||||| |||||||    
T  24110098 aaccaatcaaagagagtgtgttgaaaaatgtattttagaatatgtgttgctagcatttct 24110039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 6643429 - 6643329
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||||||||| | |||| |||||||||||||||||||||||    ||||||||||| |   ||||||||||||||||||||| |||| |||||    
T  6643429 tttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtggtcactatgtgaattttaaccaatcaatgagagtgtgt 6643330  T
Q  141 t 141  Q
    |    
T  6643329 t 6643329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 47 - 182
Target Start/End: Original strand, 11650916 - 11651056
Alignment:
Q  47 tgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaa-ccaatcaaagagaatgtgtt 141  Q
    |||| |||||||||| |||| | ||||||||||| |||||||||||    |||||||||||| | ||||| |||||||| ||||||||||||| | ||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggtcccatgtaaattttaagccaatcaaagagattatgtt 11651015  T
Q  142 gagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    || || || || ||| ||| ||||||| || ||||||||||    
T  11651016 gaaaaatgcgtgttaaaatgtatgttgttagcatttctcat 11651056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 1473675 - 1473594
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||  | ||||||||||||||||||||||||| | |||||||| || ||||||||| ||| | |||||||| ||||    
T  1473675 atttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgtgttgctagcatt 1473594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 4033086 - 4033161
Alignment:
Q  110 tgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatata 185  Q
    ||||||||||||||||||||||| | ||| |||| |||||||| ||| ||| | ||||| ||| ||||||||||||    
T  4033086 tgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgtgttgttaatatttctcatata 4033161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 5706640 - 5706783
Alignment:
Q  42 ttttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat-----ttggtgggcctcatgtgaattttaaccaatcaaagagaat 136  Q
    |||||| || |||||||||| | || | ||||||||||||||||| ||| || ||     ||| |||| | ||||| |||||||| |||||||||||| |    
T  5706640 tttttttattggttaaaattcatatggatcccaccaaatcatgtgcgtctcatatcaattttgatgggtcccatgtaaattttaatcaatcaaagagagt 5706739  T
Q  137 gtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||||| |||| ||| ||| ||| | |||||||| ||||||||    
T  5706740 gtgttgaaaagtatgtgttaaaatgtgtgttgctatcatttctc 5706783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 1473618 - 1473688
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca 93  Q
    ||||| ||||||||||||  | |||||| |||||||||| |||| | | ||||||||||||||||||||||    
T  1473618 acacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtccca 1473688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 31946957 - 31946916
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatt 61  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  31946957 aacacacacttttcaacacacacttttttatcggttaaaatt 31946916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 17389991 - 17390063
Alignment:
Q  110 tgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    |||||||||||||||||||||||||  ||||||| || || || ||| ||| | |||||||| ||||||||||    
T  17389991 tgtgaattttaaccaatcaaagagagagtgttgaaaattgcgtgttaaaatgtgtgttgctagcatttctcat 17390063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 34093904 - 34093948
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||    
T  34093904 catgtgaattttaaccaatcaaagagattatgttgaaaagtgtgt 34093948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 3150209 - 3150276
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgg 87  Q
    |||||| | ||||||||| ||| ||||| || |||||||||| |||| | ||||||||||||||||||    
T  3150209 aacacatatttttcaacagacaatttttaattggttaaaattcacatgggtcccaccaaatcatgtgg 3150276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 17600695 - 17600765
Alignment:
Q  106 ctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    ||||||||| ||||||||||||||||||||| |||||| || ||| | ||| ||| | ||||| |||||||    
T  17600695 ctcatgtgagttttaaccaatcaaagagaatatgttgaaaaatgtttgttaaaatgtgtgttgttaacatt 17600765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 182
Target Start/End: Complemental strand, 4483407 - 4483341
Alignment:
Q  114 aattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    |||||||||||||||||||||  ||||||| |||||| | ||| ||| ||||||||||  |||||||||    
T  4483407 aattttaaccaatcaaagaga--gtgttgaaaagtgtatgttaaaatgtatgttgctagtatttctcat 4483341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 28865410 - 28865483
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca 93  Q
    |||| |||||||  |||| || |||||| || |||||||||| |||| | ||||||||| ||||||||||||||    
T  28865410 aacatacactttctaacatacttttttttattggttaaaattcacatgggtcccaccaattcatgtgggtccca 28865483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 4033028 - 4032957
Alignment:
Q  114 aattttaaccaatcaaagagaatgtgttgagaagtgtgtat--tagaatatatgttgctaacatttctcata 183  Q
    ||||| ||||||| ||||||| |||||||| || ||| |||  || ||||| ||||||||||||||||||||    
T  4033028 aatttcaaccaattaaagagagtgtgttgaaaaatgtttatgttaaaatatgtgttgctaacatttctcata 4032957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 9358280 - 9358244
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaa 130  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  9358280 aatttagtgggtctcatgtgaattttaaccaatcaaa 9358244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 7444281 - 7444445
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| |||||||||||  || ||| ||||||||||||| | | || ||||||||||||||||||||||||    |||||||| || | ||||||||    
T  7444281 aacacacatttttcaacacattttctttaatcggttaaaattcaaagagttcccaccaaatcatgtgggtcccatataaatttggtaggtcccatgtgaa 7444380  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||  ||||||||||||||||||| |||||| | ||||||| | |||||||||||||||||    
T  7444381 ttttaactcatcaaagagaatgtgttgaaaagtgtttgttagaatgtgtgttgctaacatttctc 7444445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 2542816 - 2542693
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||||||||| |||| ||| |||||||||||||||||| |||    ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  2542816 tttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtgggcctcatgtaaattttaaccaatcaaagagagtgtgt 2542717  T
Q  141 tgagaagtgtgtattagaatatat 164  Q
    ||| || ||||| ||| |||||||    
T  2542716 tgaaaaatgtgtgttaaaatatat 2542693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 34437598 - 34437761
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca---aatttggtgggcctcatgtgaat 116  Q
    |||||||| ||||||||| ||  | |||||| |||||||||| |||| | ||||||||||||||||||| ||||   ||||||| ||| | |||||||||    
T  34437598 aacacacatttttcaacaaactctctttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataatttggggggacccatgtgaat 34437697  T
Q  117 tttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||||||||| |||||||| ||||| || ||| ||| | |||||||| | ||||||    
T  34437698 tttaaccaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgctagcgtttctc 34437761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 34437736 - 34437601
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat---ttggtgggcctcatgtgaat 116  Q
    ||||| |||||||||||||||  | |||||| |||||||||| |||| | |||| |||||| || ||||||||| ||   |||||||| | |||||||||    
T  34437736 aacacgcacttttcaacacactctctttgattggttaaaattcacatgggtccccccaaattatatgggtcccacatgatttggtgggacccatgtgaat 34437637  T
Q  117 tttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||||||||||||| | |||||| || |||||    
T  34437636 tttaaccaatcaaagagagtttgttgaaaaatgtgt 34437601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 31970259 - 31970116
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    ||||||| |||||||||||||  ||||| || | ||||| || | || | ||||||||||||||||||||||||    |||||||||||    |||||||    
T  31970259 aacacacgcttttcaacacactctttttaattgattaaatttcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggttcaatgtgaa 31970160  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaa 159  Q
    ||||||||||||||| ||| |||||||| || ||||| ||||||    
T  31970159 ttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttagaa 31970116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 731446 - 731305
Alignment:
Q  43 tttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgt 138  Q
    ||||| || |||||||||||||||   || |||||||||||||||||||||    |||||||||   |||||||||||||||| ||||||||   |||||    
T  731446 ttttttattggttaaaatttacatgagtcgcaccaaatcatgtgggtcccatataaatttggtgaatctcatgtgaattttaatcaatcaaaataaatgt 731347  T
Q  139 gttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||| || | ||| ||||||| ||| |||||| ||||||||    
T  731346 gttgaaaaatatgtgttagaatgtatattgctagcatttctc 731305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 53 - 133
Target Start/End: Original strand, 23317942 - 23318026
Alignment:
Q  53 gttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagag 133  Q
    ||||||||| |||||| |||||||||||||||||||||||    |||||| ||||  ||||||||||||||||||||| ||||||    
T  23317942 gttaaaattcacataggtcccaccaaatcatgtgggtcccatataaatttagtggatctcatgtgaattttaaccaattaaagag 23318026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 49822620 - 49822695
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcata 183  Q
    ||||||||||||||||||||||||||| |||||||| || ||||| ||| ||||| |||||||| |||| ||||||    
T  49822620 catgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttataatatgtgttgctagcattcctcata 49822695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 38663651 - 38663778
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc----caaatttggtgggcctcatgtgaa 115  Q
    |||||| | ||||||||||||  | |||||| ||||| |||| |||||| |||||||||||||| |||||||     |||||||||||| | ||||||||    
T  38663651 aacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaatttggtgggtcccatgtgaa 38663750  T
Q  116 ttttaaccaatcaaagagaatgtgttga 143  Q
    ||||||||||| ||| ||| | ||||||    
T  38663751 ttttaaccaattaaaaagagtatgttga 38663778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 185
Target Start/End: Original strand, 40668932 - 40669096
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattt 118  Q
    |||||| ||| |||||||  | |||||| |||||||| | |||| | || ||| |||| ||||||| ||||    ||||||||||  | | |||||||||    
T  40668932 acacacattttaacacactctctttgattggttaaaactcacatgggtctcacaaaattatgtgggacccatataaatttggtggaacccgtgtgaattt 40669031  T
Q  119 taaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatata 185  Q
    |||||||||||||||| |||||||| |||||||  ||| ||| | |||||||| |||||||||||||    
T  40669032 taaccaatcaaagagagtgtgttgaaaagtgtg--ttaaaatgtgtgttgctagcatttctcatata 40669096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 939380 - 939306
Alignment:
Q  109 atgtgaattttaaccaatcaaagaga--atgtgttgagaagtgtgtattagaatatatgttgctaacatttctca 181  Q
    ||||||||||||||||||||||||||  ||||||||| |  ||||||||||||| ||||||| || |||||||||    
T  939380 atgtgaattttaaccaatcaaagagaatatgtgttgaaatatgtgtattagaatgtatgttgttagcatttctca 939306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 39131679 - 39131584
Alignment:
Q  43 tttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagaga 134  Q
    |||||||| |||| ||||| |||||| | ||||||||||| |||||||||    |||||||  ||| | |||||||||||||||||||||||||||    
T  39131679 tttttgattggttgaaattcacatagttgccaccaaatcaagtgggtcccgtataaatttgaggggacccatgtgaattttaaccaatcaaagaga 39131584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 16661863 - 16661810
Alignment:
Q  107 tcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaat 160  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||| |||||||    
T  16661863 tcatgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaat 16661810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 45563091 - 45563201
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||||||||  |||| |||||||||||||||||| | || ||    ||||||||||  ||||||| |||||||||| |||||||| | |||||    
T  45563091 tttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttggtggatctcatgtaaattttaaccgatcaaagaaagtgtgt 45563190  T
Q  141 tgagaagtgtg 151  Q
    ||| |||||||    
T  45563191 tgaaaagtgtg 45563201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 178
Target Start/End: Complemental strand, 21281538 - 21281454
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatc-aaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttc 178  Q
    |||||||||| |  ||||||||||||||||||| ||| |||||||||||| |||||| | ||| ||||| ||||||||| |||||    
T  21281538 atttggtgggacctatgtgaattttaaccaatcaaaaaagaatgtgttgaaaagtgtatgttaaaatatgtgttgctaatatttc 21281454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 49403472 - 49403633
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| |||| |||| |  |||| |||| |||||||||| |||||  ||||| ||||| |||||||| |||    ||||||||||| ||||||||||    
T  49403472 aacacacattttttaacatattttttatgattggttaaaattcacataagtcccatcaaattatgtgggttccatataaatttggtgggtctcatgtgaa 49403571  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacattt 177  Q
    ||||||| ||| ||| | | |||||||| || | |   ||| ||||| ||||||||||||||    
T  49403572 ttttaacaaataaaaaaaagtgtgttgaaaaatataggttaaaatatgtgttgctaacattt 49403633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 2542794 - 2542828
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttg 142  Q
    |||||||||||||||||||||||||||||||||||    
T  2542794 catgtgaattttaaccaatcaaagagaatgtgttg 2542828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 45563201 - 45563159
Alignment:
Q  24 cacacttttcaacacacattttttgatcggttaaaatttacat 66  Q
    ||||||||||||||||| || ||||||||||||||||||||||    
T  45563201 cacacttttcaacacactttctttgatcggttaaaatttacat 45563159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 939359 - 939461
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||||||||| |||||  || || ||||| |||||| |||||    ||||||||| | | ||||| ||||||||||||||||||| |||||||    
T  939359 tttgattggttaaaattcacataaatctcatcaaattatgtggatcccatataaatttggtgtgtcccatgtaaattttaaccaatcaaagataatgtgt 939458  T
Q  141 tga 143  Q
    |||    
T  939459 tga 939461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 38948188 - 38948254
Alignment:
Q  112 tgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||| |||| ||||||||||| |||||| | |||||||| |||||  ||||||||||||||||||||    
T  38948188 tgaattctaacaaatcaaagagagtgtgttaaaaagtgtgtgttaga--atatgttgctaacatttctc 38948254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 34783443 - 34783483
Alignment:
Q  112 tgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  34783443 tgaattttaaccaatcaaagatagtgtgttgagaagtgtgt 34783483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 40374150 - 40374058
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagaga 134  Q
    |||||| |||||||||| |||| || ||||||||||||||||||||||    ||||||| || | |  ||||||||||||||| ||||||||||    
T  40374150 tttgattggttaaaattcacatggc-cccaccaaatcatgtgggtcccatataaatttgatgagtcctatgtgaattttaaccgatcaaagaga 40374058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 45215387 - 45215332
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtg 151  Q
    |||||||||| ||||||||| |||||||||||| |||| |||||||||| |||||||    
T  45215387 atttggtgggactcatgtga-ttttaaccaatctaagaaaatgtgttgaaaagtgtg 45215332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 45215404 - 45215463
Alignment:
Q  93 aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||||||  ||||| |||||||||| |||||||| ||||||||| || ||||||||    
T  45215404 aaatttggtggaactcatatgaattttaatcaatcaaaaagaatgtgtcgaaaagtgtgt 45215463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 15366542 - 15366480
Alignment:
Q  114 aattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    ||||||||||||||||| ||| |||||||  |||||||| ||||||| | |||||||| ||||    
T  15366542 aattttaaccaatcaaaaagagtgtgttggaaagtgtgtcttagaatgtgtgttgctagcatt 15366480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 21281477 - 21281539
Alignment:
Q  20 aacacacacttttcaacacaca-ttttttgatcggttaaaatttacatagctcccaccaaatc 81  Q
    |||| |||||||||||||||   ||||||||| |||||||||| |||||| ||||||||||||    
T  21281477 aacatacacttttcaacacattcttttttgattggttaaaattcacataggtcccaccaaatc 21281539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 38663711 - 38663630
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||| |  ||||||||| |||||||||||||||| |||||||| || | ||| ||| ||| | |||| ||||||||    
T  38663711 atttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgtgttactaacatt 38663630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 7444324 - 7444256
Alignment:
Q  112 tgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||| || ||||| |||||||||| || ||||| ||| ||| | |||||||| ||||||||    
T  7444324 tgaattttaaccgattaaagaaaatgtgttgaaaaatgtgtgttaaaatgtgtgttgctagcatttctc 7444256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 31851952 - 31852023
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctca 181  Q
    |||||||||||||| ||||||||||| |||||||| || ||| ||||| |||   |||||||||| |||||||    
T  31851952 atgtgaattttaacaaatcaaagagagtgtgttgaaaaatgtatatta-aatgcgtgttgctaacctttctca 31852023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 31970120 - 31970180
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaat 80  Q
    |||||||| ||||||||||||  |||||||| |||||||||| |||| |  ||||||||||    
T  31970120 aacacacatttttcaacacactctttttgattggttaaaattcacattgaacccaccaaat 31970180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 3907770 - 3907631
Alignment:
Q  43 tttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgt 138  Q
    |||||||| |||||||||| |||| | |||||||||||||||||||||||    |||||||||||| | ||||||||||||||||||||||||||  |||    
T  3907770 tttttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaatcaaagag--tgt 3907673  T
Q  139 gttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||| |||||| | ||||||| | |||||||| ||||||||    
T  3907672 gttgaaaagtgtttgttagaatgtgtgttgctagcatttctc 3907631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 42420017 - 42420184
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| |||||||||||   | ||| || ||||||||  ||| | | |||||||||||||||||| |||||    |||||| |||  |||||||||     
T  42420017 aacacacatttttcaacacattctctttaattggttaaaacatacgtgggtcccaccaaatcatgtggatcccatataaatttgatggatctcatgtgag 42420116  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcata 183  Q
    ||||||||||||||| ||| |||||||| ||| |||| ||||||| | ||||||||||||||||||||    
T  42420117 ttttaaccaatcaaatagagtgtgttgaaaagcgtgttttagaatgtgtgttgctaacatttctcata 42420184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 36059346 - 36059181
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||||| ||||| |||||||| || |||||| ||||||||||||||| | ||||| ||||||||||||||| |    ||||||| |||| ||||||||||    
T  36059346 aacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgatgggtctcatgtgaa 36059247  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcata 183  Q
    | |||| |||||||||||| | |||| | || | ||  ||| ||||| |||||||| |||||||||||    
T  36059246 tcttaatcaatcaaagagattctgttaaaaattatg--ttaaaatatgtgttgctagcatttctcata 36059181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 4190084 - 4190225
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagaga--atgt 138  Q
    |||||| |||||||||| |||| | ||||| ||||| | |||||||| |    ||||||||||| | |||||||||||||||| ||||||||||   |||    
T  4190084 tttgattggttaaaattcacatggatcccaacaaattacgtgggtcctatgtgaatttggtgggtcccatgtgaattttaacctatcaaagagaccgtgt 4190183  T
Q  139 gttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||| |||||||| ||||||| |||||||||| ||||||||    
T  4190184 gttgaaaagtgtgtgttagaatgtatgttgctagcatttctc 4190225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 22399831 - 22399749
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| |||||||| ||||| |||||||||| | |||||||| ||||    
T  22399831 aatttggtgggtctcatgtgaattttatccaatcaaaaagagtgtgttgaaaagtgagtattagaatgtgtgttgctagcatt 22399749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 25545354 - 25545240
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattt 118  Q
    |||||| ||| |||||||  | |||||| |||||||||| || |   |||||||||||||||| |||||||    ||||| ||||| |||||||||||||    
T  25545354 acacacattttaacacactctctttgattggttaaaattcacgtgagtcccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattt 25545255  T
Q  119 taaccaatcaaagag 133  Q
    |||||||||||||||    
T  25545254 taaccaatcaaagag 25545240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 33029556 - 33029469
Alignment:
Q  93 aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||| || || ||||||||||| ||| |||||||||||||||| |||| | | ||| ||||| |||||||| ||||||||    
T  33029556 aaatttggtgggacttatatgaattttaactaattaaagagaatgtgttgaaaagtatatgttaaaatatgtgttgctagcatttctc 33029469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 41169415 - 41169554
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||| ||||| |||| | | ||||||||||||| | ||||||    ||||||||||  | |||||||||||||||  |||||||||| |||||    
T  41169415 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatcacatgtgaattttaacggatcaaagagagtgtgt 41169514  T
Q  141 tgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||| || ||||| ||| ||||| |||| ||| ||||||||    
T  41169515 tgaaaaatgtgtgttaaaatatgtgttactagcatttctc 41169554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 3907656 - 3907780
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatc-atgtgggtcccaaat---ttggtgggcctcatgtgaa 115  Q
    |||| ||||||||||||||||  | |||||| |||||||||| |||| |  ||||||||||  || |||| |||| ||   |||||||| | ||||||||    
T  3907656 aacaaacacttttcaacacac--tctttgattggttaaaattcacatgggacccaccaaatttatatgggacccacatgatttggtgggacccatgtgaa 3907753  T
Q  116 ttttaaccaatcaaagagaatgtgttg 142  Q
    ||||||||||||||| |||||||||||    
T  3907754 ttttaaccaatcaaaaagaatgtgttg 3907780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 28907416 - 28907363
Alignment:
Q  107 tcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaat 160  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||| |||||||    
T  28907416 tcatgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaat 28907363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 160
Target Start/End: Complemental strand, 28943811 - 28943758
Alignment:
Q  107 tcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaat 160  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||| |||||||    
T  28943811 tcatgtgaattttaaccgatcaaagagaatgtgttgaaaaatgtgtgttagaat 28943758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 25545297 - 25545343
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    |||||||||| |||| |||||||||||||||||||||||| ||||||    
T  25545297 atttggtgggactcacgtgaattttaaccaatcaaagagagtgtgtt 25545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 33029572 - 33029621
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttga 143  Q
    ||||||||||| ||||||||| |||||||| |||||||||| ||||||||    
T  33029572 aatttggtgggactcatgtgagttttaaccgatcaaagagagtgtgttga 33029621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 17474865 - 17474925
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttg 168  Q
    |||||||||||||| |||||||||||  |||||||| |||||||| ||| ||| |||||||    
T  17474865 catgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtatgttg 17474925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 4190106 - 4190072
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttg 142  Q
    ||||||||||||||||||||||||||| |||||||    
T  4190106 catgtgaattttaaccaatcaaagagagtgtgttg 4190072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 157
Target Start/End: Original strand, 32309676 - 32309738
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattag 157  Q
    ||||||||||  | |||| ||||||||| |||||||||||||| ||||| |||||||| ||||    
T  32309676 atttggtgggattaatgtaaattttaacaaatcaaagagaatgcgttgaaaagtgtgtgttag 32309738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 13122096 - 13122043
Alignment:
Q  98 tggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtg 151  Q
    ||||||| | ||||||||||||| ||||||||||||| | |||||| |||||||    
T  13122096 tggtgggacacatgtgaattttacccaatcaaagagagtatgttgaaaagtgtg 13122043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 27195331 - 27195415
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||| ||||| |||||||||||||||| |||||||||||| ||  |||| |||||||| ||| ||| | |||| ||| ||||||||    
T  27195331 attttgtgggactcatgtgaattttaatcaatcaaagagagtgcattga-aagtgtgtgttaaaatgtgtgttactagcatttctc 27195415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 32309736 - 32309663
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca 93  Q
    ||||||||||||||||| ||   | ||||||  ||||||||||||||   ||||||||||||||||| ||||||    
T  32309736 aacacacacttttcaacgcattctctttgatttgttaaaatttacattaatcccaccaaatcatgtgagtccca 32309663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 137
Target Start/End: Complemental strand, 35244887 - 35244858
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatg 137  Q
    ||||||||||||||||||||||||||||||    
T  35244887 catgtgaattttaaccaatcaaagagaatg 35244858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 3771259 - 3771291
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    ||||||||||||||||||||||||| |||||||    
T  3771259 atgtgaattttaaccaatcaaagagtatgtgtt 3771291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 22399860 - 22399888
Alignment:
Q  106 ctcatgtgaattttaaccaatcaaagaga 134  Q
    |||||||||||||||||||||||||||||    
T  22399860 ctcatgtgaattttaaccaatcaaagaga 22399888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 35244916 - 35244984
Alignment:
Q  112 tgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||||| ||||||||||||| | |||||||| |||||| | ||| ||| | |||||||| ||||||||    
T  35244916 tgaatttcaaccaatcaaagaaagtgtgttgacaagtgtatgttaaaatgtgtgttgctagcatttctc 35244984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 40927657 - 40927770
Alignment:
Q  71 cccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgt 166  Q
    |||| |||||||||||||| |||    || |||||||| | |||||||||||| |||||||||||| | | |||||| || | ||| ||| ||| | |||    
T  40927657 cccatcaaatcatgtgggttccatgtaaaattggtgggtcccatgtgaattttgaccaatcaaagatagtttgttgaaaaatttgtgttataatgtgtgt 40927756  T
Q  167 tgctaacatttctc 180  Q
    ||||| ||||||||    
T  40927757 tgctagcatttctc 40927770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 180
Target Start/End: Complemental strand, 42249457 - 42249385
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||| ||||||||||||| ||| | | |||||||| || | ||| ||||||| |||||||||| ||||||||    
T  42249457 catgtaaattttaaccaattaaaaatagtgtgttgaaaaatatgtgttagaatttatgttgctagcatttctc 42249385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 42420056 - 42420012
Alignment:
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaat 160  Q
    ||||||||||| |||||||||||||||| || ||||| |||||||    
T  42420056 ttttaaccaattaaagagaatgtgttgaaaaatgtgtgttagaat 42420012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 21434012 - 21433876
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||| ||||||||||||||||  |  ||||| |||||||||| |||| | ||||||||||||||||||||| ||    ||||||||||| ||||||||||    
T  21434012 aacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttggtgggtctcatgtgaa 21433913  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||||||||||| |||||||| || |||||    
T  21433912 ttttaaccaatcaaagagagtgtgttgaaaaatgtgt 21433876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 16457920 - 16458083
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||||||| |||  |||||||  | |||||| |||||||||| |||| | ||||| |||||||||||||||||    |||||||||||| ||||  ||||    
T  16457920 aacacacattttctaacacactctctttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgggtctcacatgaa 16458019  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
     ||||| | |||||||||| |||||||| |||||||| ||||||| | |||||||| ||||||||    
T  16458020 -tttaatcgatcaaagagagtgtgttgaaaagtgtgtgttagaatgtgtgttgctagcatttctc 16458083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 9023910 - 9024049
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||| |||||||| ||||||| ||||||||| || ||||||| ||||   ||||| ||||||||||| ||||||    ||||  ||||| | ||||| ||    
T  9023910 aacatacactttttaacacacgttttttgattgggtaaaattcacatgagtcccaacaaatcatgtgagtcccatataaattgagtgggtcccatgtaaa 9024009  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtatt 155  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  9024010 ttttaacaaatcaaagagaatgtgttgaaaagtgtgtatt 9024049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 3688570 - 3688735
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca---aattt--ggtgggcctcatgtga 114  Q
    |||||||| |||||||||||  || ||||||  ||||||||| |||| | || |||||||||||||||||||||   |||||  | |||| | |||||||    
T  3688570 aacacacatttttcaacacattttctttgattagttaaaattcacatgggtctcaccaaatcatgtgggtcccatataattttagatgggtcacatgtga 3688669  T
Q  115 attttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||||||||| | |||||||  |||||| ||||| ||| | ||||| || ||||||||    
T  3688670 attttaaccaatcaaagaaagtgtgttggaaagtgtatattaaaatgtgtgttgttagcatttctc 3688735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 31758690 - 31758814
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacata-gctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaatt 117  Q
    |||||||||||||||||   | |||||| |||||||||| ||||| ||||| ||||||||||||||||| ||    ||||||||||| |||||  |||||    
T  31758690 acacacttttcaacacattctatttgattggttaaaattcacataagctcc-accaaatcatgtgggtctcatgtaaatttggtgggtctcataagaatt 31758788  T
Q  118 ttaaccaatcaaagagaatgtgttga 143  Q
    |||| |||||||||||||||||||||    
T  31758789 ttaatcaatcaaagagaatgtgttga 31758814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 167
Target Start/End: Complemental strand, 2247715 - 2247568
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca---aatttggtgggcctcatgtgaatttt 119  Q
    ||||||||| |||| |||  | |||||| |||||||||| |||| | ||||||||||||||||||||| ||   || || ||||  ||| ||||||||||    
T  2247715 acacactttccaacccactctctttgattggttaaaattaacatggatcccaccaaatcatgtgggtcgcatataaatttgtggatctcgtgtgaatttt 2247616  T
Q  120 aaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgtt 167  Q
    || |||| ||||||| |||||||| |||||||| ||| ||||| ||||    
T  2247615 aatcaattaaagagagtgtgttgaaaagtgtgtgttaaaatatgtgtt 2247568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 33414003 - 33414117
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc----caaatttggtgggcctcatgtgaa 115  Q
    |||||||||||||||||||||  | |||||| |||||||||| |||| | ||||||||||||| ||||||||     |||||||||||| | ||| ||||    
T  33414003 aacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtcccatatgaa 33414102  T
Q  116 ttttaaccaatcaaa 130  Q
    |||||| ||||||||    
T  33414103 ttttaatcaatcaaa 33414117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 93 - 184
Target Start/End: Complemental strand, 41840655 - 41840564
Alignment:
Q  93 aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatat 184  Q
    |||||||||||  | ||||| |||||||| |||||||||||| |||||||| || | ||| ||| ||| |||||||||||||||||||||||    
T  41840655 aaatttggtggaacccatgtaaattttaatcaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtatgttgctaacatttctcatat 41840564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 19382300 - 19382417
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaatttggtgggcctcatgtgaattttaac 122  Q
    ||||||||| ||||||||  | |||||| |||||||||| |||| | ||||||||||||||||||||   |||||||| ||| | ||| | |||||||||    
T  19382300 acacactttccaacacactctatttgattggttaaaattcacatggatcccaccaaatcatgtgggt-ataaatttggcgggacccatataaattttaac 19382398  T
Q  123 caatcaaagagaatgtgtt 141  Q
    |||||||| ||| ||||||    
T  19382399 caatcaaaaagagtgtgtt 19382417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 45654150 - 45653986
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||||| | |||| ||||||| ||||||||| |||||||||| |||| | ||||| |||||||||||||||||    ||||||| | || ||||| | ||    
T  45654150 aacacatattttttaacacactttttttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttgataggtctcatat-aa 45654052  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
     |||||||||||||| ||| |||||||| |||||| | |||| || | |||||||| ||||| ||||    
T  45654051 atttaaccaatcaaa-agagtgtgttgaaaagtgtctgttaggatgtgtgttgctagcatttatcat 45653986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 7403174 - 7403238
Alignment:
Q  107 tcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgcta 171  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||| ||| ||||| ||||||||    
T  7403174 tcatgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgttaaaatatgtgttgcta 7403238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 52374917 - 52375053
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||||||||||||||||||||  | |||||| | |||||||| |||| | || |||||||| |||||||||||    ||||||| |||  |  |||||||    
T  52374917 aacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttgatggatcaaatgtgaa 52375016  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||||||| ||| ||| |||| || |||||    
T  52375017 ttttaaccaatcaaaaagagtgtattgaaaaatgtgt 52375053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 15134567 - 15134702
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| |||||||||||   | ||| || |||||||||| |||| | ||| || ||||||| |||||||||    ||||||||| | | ||||||||    
T  15134567 aacacacatttttcaacacattctcttttattggttaaaattcacatgggtccgactaaatcatttgggtcccatataaatttggtgagtcccatgtgaa 15134666  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtg 151  Q
    ||||||||||||| ||| | |||||||| |||||||    
T  15134667 ttttaaccaatcacagacagtgtgttgaaaagtgtg 15134702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 15134614 - 15134541
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctca 181  Q
    ||||||||||||||||||| |||||||||||||||| || ||||| ||| ||| | |||| ||| |||||||||    
T  15134614 catgtgaattttaaccaataaaagagaatgtgttgaaaaatgtgtgttaaaatttgtgttactagcatttctca 15134541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 31758747 - 31758690
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||||  || |||||||||||||||||||||| |||||||||||| ||||||||    
T  31758747 atttggtggagcttatgtgaattttaaccaatcaaatagaatgtgttgaaaagtgtgt 31758690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 33414063 - 33414006
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||   ||||||||||||||||||||||||||| |||||||| ||||||||    
T  33414063 atttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgt 33414006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 993277 - 993239
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagag 133  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  993277 atttggtgggactcatgtgaattttaaccaatcaaagag 993239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 21433952 - 21434033
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    ||||||||||   |||||||||||||||||||||| |||| |||||||| |||||| | ||| ||| | |||||||| ||||    
T  21433952 atttggtgggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgtgttgctaccatt 21434033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 38036286 - 38036249
Alignment:
Q  106 ctcatgtgaattttaaccaatcaaagagaatgtgttga 143  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  38036286 ctcatgtgaattttaaccaatcaaagaaaatgtgttga 38036249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 34397491 - 34397554
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaa 172  Q
    ||||||||||||| | ||||||||||||| ||| ||||||||||| ||| ||| |||||||||||    
T  34397491 catgtgaattttatc-aatcaaagagaatatgtcgagaagtgtgtgttaaaatgtatgttgctaa 34397554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 38036312 - 38036360
Alignment:
Q  93 aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    ||||||| |||| ||||||||||||||||| ||||||||| ||||||||    
T  38036312 aaatttgttgggtctcatgtgaattttaacaaatcaaagacaatgtgtt 38036360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 42516538 - 42516598
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgc 169  Q
    |||||||||| ||||||  |||||||||||||||| |||||||| ||| ||||| ||||||    
T  42516538 atgtgaatttaaaccaaataaagagaatgtgttgaaaagtgtgtgttaaaatatgtgttgc 42516598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 993219 - 993290
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca 93  Q
    ||||||||  |||||||||||  | |||||| |||||||||| ||||   ||||||||||||||||||||||||    
T  993219 aacacacatctttcaacacac--tctttgattggttaaaattcacatgagtcccaccaaatcatgtgggtccca 993290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 160
Target Start/End: Complemental strand, 16577314 - 16577248
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaat 160  Q
    ||||||||||| |  |||| ||||||||| ||||||| |||||||||||| || ||||| |||||||    
T  16577314 aatttggtgggacctatgtaaattttaacaaatcaaacagaatgtgttgaaaaatgtgtgttagaat 16577248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 2324807 - 2324762
Alignment:
Q  106 ctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtg 151  Q
    ||||||||||||||||||||||||||||| | | |||| |||||||    
T  2324807 ctcatgtgaattttaaccaatcaaagagagtatattgaaaagtgtg 2324762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 3688630 - 3688573
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||| | | ||||||||||||||| ||||||||| |||||||||| || |||||    
T  3688630 atttggtgagacccatgtgaattttaactaatcaaagaaaatgtgttgaaaaatgtgt 3688573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 16457967 - 16457934
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    ||||||||||||||||||||||||||| ||||||    
T  16457967 catgtgaattttaaccaatcaaagagagtgtgtt 16457934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 19382357 - 19382300
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||   ||||||||||||||||||||||| ||| |||||||  ||||||||    
T  19382357 atttggtgggatccatgtgaattttaaccaatcaaatagagtgtgttggaaagtgtgt 19382300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 41840682 - 41840719
Alignment:
Q  106 ctcatgtgaattttaaccaatcaaagagaatgtgttga 143  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  41840682 ctcatgtgaattttaaccaatcaaatagagtgtgttga 41840719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 52374964 - 52374887
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatata 185  Q
    |||||||||||||| | |||||||||| |||||||| |||||||| ||| ||| | ||||| || |||| ||| ||||    
T  52374964 catgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgtgttgttagcattcctcgtata 52374887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 1338492 - 1338419
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgc 169  Q
    |||||||||||   ||||||| |||||||||||||||||||  ||||||| || ||||| ||| ||||| ||||||    
T  1338492 aatttggtgggatccatgtgatttttaaccaatcaaagaga--gtgttgaaaaatgtgtgttaaaatatgtgttgc 1338419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 16577253 - 16577313
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaat 80  Q
    |||||||| |||||||||||   | ||||||  |||||||||||||||| |||||||||||    
T  16577253 aacacacatttttcaacacattctgtttgatttgttaaaatttacataggtcccaccaaat 16577313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 5443668 - 5443503
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaa 115  Q
    |||||||| ||||||||| || || |||||| |||||||||| |||||||||| ||||||| |||||| ||||| ||    || ||||| |  |||||||    
T  5443668 aacacacatttttcaacatactttctttgattggttaaaattcacatagctcc-accaaattatgtggatcccatataacttttgtgggtcctatgtgaa 5443570  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    || |||||  ||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  5443569 ttctaaccggtcaaacagaatgtgttgaaaagtgtgtgttagaatgtatgttgctaacatttctcat 5443503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 5452713 - 5452548
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaa 115  Q
    |||||||| ||||||||| || || |||||| |||||||||| |||||||||| ||| ||| |||||| ||||| ||    || ||||| |  |||||||    
T  5452713 aacacacatttttcaacatactttctttgattggttaaaattcacatagctcc-acccaattatgtggatcccatataacttttgtgggtcctatgtgaa 5452615  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    || |||||  ||||| |||||||||||| |||||||| ||||||| |||||||||||||||||||||    
T  5452614 ttctaaccggtcaaacagaatgtgttgaaaagtgtgtgttagaatgtatgttgctaacatttctcat 5452548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 2276413 - 2276254
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattt 118  Q
    |||||| ||| |||||||  | ||| || |||||||||| ||||   ||||||||||| |||||||||||    ||||||||||||   |||||||||||    
T  2276413 acacacattttaacacactatctttaattggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatccatgtgaattt 2276314  T
Q  119 taaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    |||||||||||||||| |||||||| |||||||| ||||    | |||||||||||||||||||    
T  2276313 taaccaatcaaagagagtgtgttgaaaagtgtgtgttag----tgtgttgctaacatttctcat 2276254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 49107044 - 49106909
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc---caaatttggtgggcctcatgtgaat 116  Q
    |||||||||||||||||||||  | |||||| |||||||||| |||||| ||||||||||||||| ||| ||    ||||||||| || | |||||||||    
T  49107044 aacacacacttttcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatgcgggaccatataaatttggtaggacccatgtgaat 49106945  T
Q  117 tttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||| |||||||||||  |||||||  ||||||||    
T  49106944 tttaatcaatcaaagagtgtgtgttggaaagtgtgt 49106909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 12275877 - 12275715
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||||||||||| ||||||||  | || ||| |||||||||| | || | |||||||||||||||||||||||    |||||||||||| | |||||||     
T  12275877 aacacacactttccaacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgat 12275778  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||  |||||| |||||||  |||||||  ||||||| | |||||||| ||||||||    
T  12275777 ttttaaccaattgaagagagtgtgttggaaagtgtg--ttagaatgtgtgttgctagcatttctc 12275715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 3235695 - 3235534
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattt 118  Q
    |||||| || ||||||||  |||||||| |||||||||| |||| | ||| ||| ||  ||||||||||||    |||||| |||| |||||||||||||    
T  3235695 acacacattccaacacactctttttgattggttaaaattcacatgggtccgacccaaatatgtgggtcccatgtaaatttgatgggtctcatgtgaattt 3235596  T
Q  119 taaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||||||| ||| |||  |||||||| ||| ||| | ||||| || ||||||||    
T  3235595 taaccaatcaaagagagtgtattggaaagtgtgtgttaaaatgtgtgttgttagcatttctc 3235534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 49106984 - 49107071
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    |||||||||| |  |||||||||||||||||||||||||| |||||||| |||||||| ||||||| ||||||| || ||||| ||||    
T  49106984 atttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttagaatgtatgttggtagcatttttcat 49107071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 94 - 182
Target Start/End: Original strand, 47497778 - 47497866
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| | |||| || ||||| ||||||| | ||||| ||  |||||||||    
T  47497778 aatttggtgggactcatgtgaattttaaccaatcaaagaaaatatattgaaaaatgtgtgttagaatgtgtgttgttagaatttctcat 47497866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 141
Target Start/End: Original strand, 2276277 - 2276402
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaa-tcatgtgggtccca---aatttggtgggcctcatgtgaa 115  Q
    |||||||||||||||||||||  | |||||| |||||||||| |||| | |||||||||| | ||  ||| ||||   |||||||||||  |||||||||    
T  2276277 aacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatttataagggacccacataatttggtgggattcatgtgaa 2276376  T
Q  116 ttttaaccaatcaaagagaatgtgtt 141  Q
    ||||||||||| ||||| | ||||||    
T  2276377 ttttaaccaattaaagatagtgtgtt 2276402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 12275817 - 12275900
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttc 178  Q
    |||||||||| | ||| |||||||||||||||| |||||| |||||||  |||||||| ||||||| | |||||||| ||||||    
T  12275817 atttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgttagaatgtgtgttgctagcatttc 12275900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 26647783 - 26647850
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    ||||||||| |||||||||||| | | |||||||| |||||||||||||||| |||||||||| ||||    
T  26647783 atgtgaattctaaccaatcaaaaatagtgtgttgaaaagtgtgtattagaatgtatgttgctagcatt 26647850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 26862992 - 26863073
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||| | ||||||||||||||||||| ||||||| | || ||| |||||||||||| ||| | |||||||| ||||    
T  26862992 atttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgtgttgctagcatt 26863073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 31042184 - 31042115
Alignment:
Q  110 tgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttct 179  Q
    ||||||||||||||||||||||| ||||| |||| |||||||| ||| ||||| |||||||  |||||||    
T  31042184 tgtgaattttaaccaatcaaagataatgtattgaaaagtgtgtgttaaaatatgtgttgctgccatttct 31042115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 640902 - 641001
Alignment:
Q  43 tttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgt 138  Q
    |||||||| |||||||||||| || | || ||||||||||||||| | ||    ||||||||| |  ||||||||||||||||| ||||||| |||||||    
T  640902 tttttgattggttaaaatttatatgggtcacaccaaatcatgtggattccatataaatttggtagatctcatgtgaattttaacgaatcaaaaagaatgt 641001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 24516616 - 24516537
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||| | ||||||||||||||||||||||||| | | |||||  ||| |||||||  ||||| |||||||||||||    
T  24516616 atttggtgggacccatgtgaattttaaccaatcaaagaaagtatgttggaaagagtgtatt--aatatgtgttgctaacatt 24516537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 40134523 - 40134402
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||||||||||| ||||||||  | | |||| |||||||||| |||| | ||||||||||| |||||||||||    ||||||||| || | | ||||||    
T  40134523 aacacacactttccaacacac--tctctgattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtaggtcccctgtgaa 40134426  T
Q  116 ttttaaccaatcaaagagaatgtgtt 141  Q
    |||  |||||||||||||| ||||||    
T  40134425 ttt--accaatcaaagagagtgtgtt 40134402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 26863049 - 26862927
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc----caaatttggtgggcctcatgtgaattt 118  Q
    |||||||||||| || ||  | ||| || |||||||||| |||| | ||||||||||||||||||||||     |||| |||||   | |||||||||||    
T  26863049 acacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatggtgaatcccatgtgaattt 26862950  T
Q  119 taaccaatcaaagagaatgtgtt 141  Q
    ||||||||||| |||| ||||||    
T  26862949 taaccaatcaaggagagtgtgtt 26862927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 5443622 - 5443689
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||||||||||||||||| | | |||||| || ||||| ||||||| | |||||||| ||||    
T  5443622 atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgctagcatt 5443689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 5452667 - 5452734
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||||||||||||||||| | | |||||| || ||||| ||||||| | |||||||| ||||    
T  5452667 atgtgaattttaaccaatcaaagaaagtatgttgaaaaatgtgtgttagaatgtgtgttgctagcatt 5452734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 10056762 - 10056630
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaa 115  Q
    ||||| |||||||||||||||  | ||| ||  ||||||||  | || | |||| ||||||||||||||||||| ||    ||||||||   ||||||||    
T  10056762 aacacgcacttttcaacacactctctttaattagttaaaatccatatgggtccctccaaatcatgtgggtcccatataaaattggtgggttccatgtgaa 10056663  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagt 148  Q
    |||| |||||||||| ||| |||||||| ||||    
T  10056662 ttttgaccaatcaaaaagagtgtgttgaaaagt 10056630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 18089780 - 18089839
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgta 153  Q
    |||||||| || | |||||||||||||||||| |||||||| |||||| | |||||||||    
T  18089780 aatttggttggacccatgtgaattttaaccaaccaaagagagtgtgttaaaaagtgtgta 18089839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 130
Target Start/End: Complemental strand, 36129129 - 36129094
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaa 130  Q
    |||||||||| |||||||||||||||||||||||||    
T  36129129 atttggtgggactcatgtgaattttaaccaatcaaa 36129094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 7017164 - 7017222
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||| || || |||||||||||||||||||||||||| ||| |||| || |||||    
T  7017164 aatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgt 7017222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 7032522 - 7032580
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||| || || |||||||||||||||||||||||||| ||| |||| || |||||    
T  7032522 aatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgt 7032580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 24516559 - 24516670
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattt 118  Q
    |||| |||| ||||| || || |||||| |||||||||| |||| | |||||||||||||||||| | ||    |||||| ||||  | |||||||||||    
T  24516559 acactctttccaacatactttctttgattggttaaaattcacatgggtcccaccaaatcatgtggattccatctaaatttagtggatcccatgtgaattt 24516658  T
Q  119 taaccaatcaaa 130  Q
    ||| ||||||||    
T  24516659 taatcaatcaaa 24516670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 46074134 - 46074180
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    ||||| |||| ||||||||||||||||||||| ||||||| ||||||    
T  46074134 atttgatgggactcatgtgaattttaaccaattaaagagagtgtgtt 46074180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 11201353 - 11201296
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||||| | ||||||||||||||| ||| ||||||| |||||||  ||||||||    
T  11201353 atttggtgggacccatgtgaattttaactaatgaaagagagtgtgttggaaagtgtgt 11201296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 36992827 - 36992949
Alignment:
Q  25 acacttttcaacacacattttttgatcggtt-aaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaatttt 119  Q
    ||||||||||||| | |||||||||| |||| |||||| ||||   || |||||||||||||  |||||| ||    |||||||| |||||||||||| |    
T  36992827 acacttttcaacatatattttttgattggtttaaaattcacatgaatctcaccaaatcatgtaagtcccatatgattttggtgggtctcatgtgaattct 36992926  T
Q  120 aaccaatcaaagagaatgtgttg 142  Q
    ||| ||| ||||||  |||||||    
T  36992927 aacaaattaaagagcgtgtgttg 36992949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 140
Target Start/End: Complemental strand, 29356964 - 29356932
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgt 140  Q
    ||||||||||||||||||||||||||| |||||    
T  29356964 catgtgaattttaaccaatcaaagagagtgtgt 29356932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 45200484 - 45200612
Alignment:
Q  54 ttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtg 149  Q
    |||||||||| || | | |||||||||||||||| || |    ||||||||||| |||||  |||||||||| |||| ||| ||| ||| |||| || |     
T  45200484 ttaaaatttatatgggttccaccaaatcatgtggatctcatataaatttggtggacctcaaatgaattttaatcaattaaaaagagtgtattga-aaata 45200582  T
Q  150 tgtattagaatatatgttgctaacatttct 179  Q
    ||||||||||| ||| ||||| ||||||||    
T  45200583 tgtattagaatgtatcttgctgacatttct 45200612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 3901632 - 3901511
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaa-atttggtgggcctcatgtgaattt 118  Q
    |||||||||||||||||||||  | |||||| |||||||||| |||| | |||||||||||||||||   | ||  |||||||||| | |||||||||||    
T  3901632 aacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatgtg---cacatgatttggtgggacccatgtgaattt 3901536  T
Q  119 taaccaatcaaagagaatgtgttga 143  Q
    |||||||||||||||||||||||||    
T  3901535 taaccaatcaaagagaatgtgttga 3901511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 53 - 180
Target Start/End: Complemental strand, 14345257 - 14345126
Alignment:
Q  53 gttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagt 148  Q
    ||||||||| ||||   ||||||||||||||||||||||||    ||||||||||| |||||||| |||||||||||||||||| | |||||||| || |    
T  14345257 gttaaaattcacatgaatcccaccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatcaaagaaagtgtgttgaaaaat 14345158  T
Q  149 gtgtattagaatatatgttgctaacatttctc 180  Q
     ||| ||| ||||| |||||||||||||||||    
T  14345157 atgtgttaaaatatgtgttgctaacatttctc 14345126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 36480846 - 36480680
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    ||||||||||||||||||  |  | |||||| || ||||||| |||| | ||||||||||||||||||||||||    |||||| |||| | ||||||||    
T  36480846 aacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttgttgggtcccatgtgaa 36480747  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    ||||||||||||||||||| |||||||  ||| |||| ||| ||| | ||||| || ||||||||||    
T  36480746 ttttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgtgttgttagcatttctcat 36480680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 31205369 - 31205495
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaa 115  Q
    |||||| | ||| ||||||||  | |||||| ||||||||||||||| | ||  |||||||||||||||||||| ||    |||||||| ||||||||||    
T  31205369 aacacatattttccaacacactctctttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattggtgggtctcatgtgaa 31205468  T
Q  116 ttttaaccaatcaaagagaatgtgttg 142  Q
    |||| |||||||||||||| |||||||    
T  31205469 ttttgaccaatcaaagagagtgtgttg 31205495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 3901499 - 3901629
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaa-atttggtgggcctcatgtgaattt 118  Q
    |||||| | |||||||||||   | |||||| |||||||||| |||| | |||||||||||||||||   | ||  |||||||||| | |||||||||||    
T  3901499 aacacatatttttcaacacattctctttgattggttaaaattcacatgggtcccaccaaatcatgtg---cacatgatttggtgggacccatgtgaattt 3901595  T
Q  119 taaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||||||||||| |||||||| ||||||||    
T  3901596 taaccaatcaaagagagtgtgttgaaaagtgtgt 3901629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 51541384 - 51541218
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaa----tttggtgggcctcatgtgaa 115  Q
    |||||| | ||||||| |||| ||||||||| |||||||||| | ||   |||||||||||||||||||||| | |    ||||||||| | |||||||     
T  51541384 aacacatatttttcaatacactttttttgattggttaaaattcagatgagtcccaccaaatcatgtgggtcctatatacttttggtgggtcacatgtgag 51541285  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    ||||||||||||||| | | ||| |||| || ||| ||||||||  | |||||||| ||||||||||    
T  51541284 ttttaaccaatcaaaaatagtgtattgaaaaatgtatattagaaggtttgttgctagcatttctcat 51541218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 29955045 - 29955174
Alignment:
Q  27 acttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaac 122  Q
    |||||||||||||| ||||||||| |||||||||| |||| | ||||| |||||||||||||||||    ||||||| |||  | ||| |||||||||||    
T  29955045 acttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaattttaac 29955144  T
Q  123 caatcaaagagaatgtgttgagaagtgtgt 152  Q
     ||||||  ||| ||| |||| ||||||||    
T  29955145 taatcaagaagagtgtattgaaaagtgtgt 29955174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 30004199 - 30004328
Alignment:
Q  27 acttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaac 122  Q
    |||||||||||||| ||||||||| |||||||||| |||| | ||||| |||||||||||||||||    ||||||| |||  | ||| |||||||||||    
T  30004199 acttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttgatggatcccatatgaattttaac 30004298  T
Q  123 caatcaaagagaatgtgttgagaagtgtgt 152  Q
     ||||||  ||| ||| |||| ||||||||    
T  30004299 taatcaagaagagtgtattgaaaagtgtgt 30004328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 35357431 - 35357292
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||||||||| |||| | ||| ||||||||||||  ||||||    ||||||||||  | ||||||| ||||||||||||||||||| |||||    
T  35357431 tttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtggttcacatgtgagttttaaccaatcaaagagagtgtgt 35357332  T
Q  141 tgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||| || | | | ||||||| | |||||||| ||||||||    
T  35357331 tgaaaaatatttgttagaatgtgtgttgctagcatttctc 35357292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 29955098 - 29955022
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgcta 171  Q
    ||||| |||| | ||||||||||||||||||||||| | | |||||||| |||| ||||||| ||||||||||||||    
T  29955098 atttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgcta 29955022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 30004252 - 30004176
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgcta 171  Q
    ||||| |||| | ||||||||||||||||||||||| | | |||||||| |||| ||||||| ||||||||||||||    
T  30004252 atttgatgggacccatgtgaattttaaccaatcaaaaaaagtgtgttgaaaagtatgtattaaaatatatgttgcta 30004176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 26986340 - 26986272
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    ||||||||||||||| |||||| ||||||||||||| |||| | | ||| ||||| |||||||||||||    
T  26986340 catgtgaattttaactaatcaaggagaatgtgttgaaaagtatatgttaaaatatgtgttgctaacatt 26986272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 36007445 - 36007515
Alignment:
Q  106 ctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    ||||||||||||||||||| ||||||| |||||||||| |||||  | ||| ||| | |||||||||||||    
T  36007445 ctcatgtgaattttaaccactcaaagaaaatgtgttgaaaagtgaatgttaaaatgtgtgttgctaacatt 36007515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 1458593 - 1458515
Alignment:
Q  100 gtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||| ||||| ||||||| ||||||||||||||  |||||||| || ||||| |||||||||  |||||| |||||||||    
T  1458593 gtgggtctcatatgaatttcaaccaatcaaagag--tgtgttgaaaattgtgtgttagaatatgcgttgctgacatttctc 1458515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 11532574 - 11532460
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    ||||||||||||  |||||||  | |||||| |||||||||| |||| | | |||||||||||||||| ||||    |||||| ||||| ||  ||||||    
T  11532574 aacacacactttctaacacactctctttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatataaatttagtgggtcttgtgtgaa 11532475  T
Q  116 ttttaaccaatcaaa 130  Q
    |||| ||||||||||    
T  11532474 ttttgaccaatcaaa 11532460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 32881023 - 32881133
Alignment:
Q  46 ttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    ||||| |||||| ||| |||| | |||||| ||||||||||| |||||    ||||||||||| ||| ||| ||||||||||||| ||| ||| ||||||    
T  32881023 ttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgggtctcgtgtaaattttaaccaataaaaaagattgtgtt 32881122  T
Q  142 gagaagtgtgt 152  Q
    || || |||||    
T  32881123 gaaaaatgtgt 32881133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 36480786 - 36480867
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||| | ||||||||||||| |||||||||||||   |||||| |||||||| ||| ||| | |||||||| ||||    
T  36480786 atttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaaaagtgtgtgttaaaatgtgtgttgctagcatt 36480867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 40554072 - 40554174
Alignment:
Q  54 ttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtg 149  Q
    |||||||| |||| | ||||||||||||||||| | ||||    |||||| |||  ||||||||| ||||||||||||||||||| ||| |||| || ||    
T  40554072 ttaaaattcacatgggtcccaccaaatcatgtgagacccatataaatttgatggaactcatgtgagttttaaccaatcaaagagagtgtattgaaaattg 40554171  T
Q  150 tgt 152  Q
    |||    
T  40554172 tgt 40554174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 49750649 - 49750614
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttga 143  Q
    |||||||||||||| |||||||||||||||||||||    
T  49750649 catgtgaattttaatcaatcaaagagaatgtgttga 49750614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 11532514 - 11532560
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    |||||||||  | ||||||||||||||||||||||||||| ||||||    
T  11532514 atttggtggaacccatgtgaattttaaccaatcaaagagagtgtgtt 11532560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 39285944 - 39285990
Alignment:
Q  112 tgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattaga 158  Q
    |||||||||||||||||||||||||| ||||||| |||  |||||||    
T  39285944 tgaattttaaccaatcaaagagaatgagttgagatgtgcctattaga 39285990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 40117776 - 40117863
Alignment:
Q  70 tcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgta 153  Q
    |||||||||||||||||||||||    ||||||||  || | ||| ||||||||||||||| ||  ||| |||||||| |||||||||    
T  40117776 tcccaccaaatcatgtgggtcccacttaaatttggcaggacccatttgaattttaaccaatgaataagagtgtgttgaaaagtgtgta 40117863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 19560689 - 19560616
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttg 168  Q
    |||||||||| | ||| ||||||| |||||||||||| || ||| |||| |||||||  ||||||| |||||||    
T  19560689 atttggtgggacccatatgaatttcaaccaatcaaagcgagtgtattgaaaagtgtgcgttagaatgtatgttg 19560616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 35357396 - 35357441
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    ||||||| || | ||||||||||||||||||||||||||| |||||    
T  35357396 atttggtaggacccatgtgaattttaaccaatcaaagagagtgtgt 35357441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 3300769 - 3300737
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    ||||||||||||||| |||||||||||||||||    
T  3300769 atgtgaattttaaccgatcaaagagaatgtgtt 3300737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 4277118 - 4276977
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcc-----tcat 110  Q
    |||||||| |||||||||||| || |||||| | |||| ||||| || | || ||  ||||||||||||||||    |||||||||||| |     ||||    
T  4277118 aacacacatttttcaacacactttctttgattgattaatatttatatgggtctcattaaatcatgtgggtcccatataaatttggtgggtctcatgtcat 4277019  T
Q  111 gtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||| |||||||| ||| | | |||| ||||||||    
T  4277018 gtgaattttaatcaatcaaaaagagtatattgaaaagtgtgt 4276977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 130
Target Start/End: Complemental strand, 19158720 - 19158684
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaa 130  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  19158720 aatttagtgggactcatgtgaattttaaccaatcaaa 19158684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 37189235 - 37189299
Alignment:
Q  107 tcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgcta 171  Q
    |||||||||||||||||||||||||||| | |||| | || ||| ||||| ||| | ||||||||    
T  37189235 tcatgtgaattttaaccaatcaaagagagtctgttaaaaaatgtatattaaaatgtgtgttgcta 37189299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 45332646 - 45332557
Alignment:
Q  57 aaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttg 142  Q
    |||||||||| | ||  ||||||||||||||||||||    ||||||||||    ||||||||||||||||||| ||||| | |||||||    
T  45332646 aaatttacatgggtctgaccaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaagaaagtgtgttg 45332557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 52596148 - 52596089
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcat 83  Q
    |||||||||| |||||| ||||||| ||| ||||||||||| |||| | ||||||||||||    
T  52596148 acacactttttaacacatattttttaatcagttaaaatttatataggt-ccaccaaatcat 52596089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 20 - 125
Target Start/End: Complemental strand, 42094341 - 42094233
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||||||||||||||||||||| | |||||| |||||||||| |||| | |||||||||||||||||||||||    |||||||||||| | ||||||||    
T  42094341 aacacacacttttcaacacacactctttgattggttaaaattcacat-ggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaa 42094243  T
Q  116 ttttaaccaa 125  Q
    ||||||||||    
T  42094242 ttttaaccaa 42094233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 160
Target Start/End: Original strand, 9430170 - 9430281
Alignment:
Q  53 gttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagt 148  Q
    ||||||||||| |||| ||| ||||||||||||||||||||    |||||| ||||  |||||||||||||||||||||||| ||||| |||||| ||||    
T  9430170 gttaaaatttatatagatcctaccaaatcatgtgggtcccatacaaatttgatggggttcatgtgaattttaaccaatcaaatagaatatgttgaaaagt 9430269  T
Q  149 gtgtattagaat 160  Q
    |||| |||||||    
T  9430270 gtgtgttagaat 9430281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 16209375 - 16209544
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||||||| ||||||||  | ||| || |||||||||| ||||   | |||||||||  ||| |||||||    |||||||||||  |||| ||||    
T  16209375 aacacacactttccaacacactctctttaattggttaaaattcacatgagttccaccaaattttgtcggtcccatataaatttggtgggtttcatttgaa 16209474  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatata 185  Q
    |||||||  ||||||||||||| ||||| |||||| | ||||||||| |||||||| |||||||||||||    
T  16209475 ttttaactgatcaaagagaatgcgttgaaaagtgtatgttagaatatgtgttgctagcatttctcatata 16209544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 33069297 - 33069145
Alignment:
Q  29 ttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaattttaacca 124  Q
    ||||||||||||  |||||||| |||||||| | || | | |||||| |||| |||||||||||| ||    |||||||| || |||||||||||||||     
T  33069297 ttttcaacacactctttttgattggttaaaaatcacttgggtcccactaaattatgtgggtcccatataaacttggtgggtctaatgtgaattttaaccg 33069198  T
Q  125 atcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacattt 177  Q
    |||||||| | |||||||| ||||||||  |||||| | ||||||||||||||    
T  33069197 atcaaagaaagtgtgttgaaaagtgtgtgatagaatgtgtgttgctaacattt 33069145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 45 - 182
Target Start/End: Complemental strand, 37810260 - 37810119
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||||||||| |||| | ||||||||||| |  |||||||||    ||||||||||| | |||||||||| |||||||||||||||| |||||    
T  37810260 tttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtcccatgtgaattataaccaatcaaagagagtgtgt 37810161  T
Q  141 tgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    ||| |||| ||  ||| ||| ||| |||||| ||||||||||    
T  37810160 tgaaaagtatgagttaaaatgtattttgctaccatttctcat 37810119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 42251163 - 42251299
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| ||||| ||||||  | |||||||||||||||||  ||| | ||||||||||| ||||||| || |    ||||||||||  | ||||||||    
T  42251163 aacacacatttttcgacacactctctttgatcggttaaaattcgcatgggtcccaccaaattatgtgggacctatataaatttggtggatcccatgtgaa 42251262  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||| |||||||||||| |||||||| ||||||||    
T  42251263 ttttaatcaatcaaagagagtgtgttgaaaagtgtgt 42251299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 45 - 134
Target Start/End: Complemental strand, 3466501 - 3466408
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagaga 134  Q
    |||||| |||||||||| |||| | | |||| ||||| |||||||||||    ||||||||||| |||||||||||||||||||||||||||||    
T  3466501 tttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttggtgggtctcatgtgaattttaaccaatcaaagaga 3466408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 25666937 - 25666801
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||| ||| ||||||||||||  | ||||||  ||||||||  |||| | |||||||||||||||| ||| |||    ||||||||||| ||||||||||    
T  25666937 aacatacaattttcaacacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccatataaatttggtgggtctcatgtgaa 25666838  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||| |||||||| ||| |||||||| || |||||    
T  25666837 ttttaatcaatcaaatagagtgtgttgaaaaatgtgt 25666801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 20 - 160
Target Start/End: Original strand, 42029342 - 42029486
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| ||||||||||||  | ||||||  ||||||||| | || | ||| ||||||||||| ||  ||||    ||||||||||| ||||||||||    
T  42029342 aacacacatttttcaacacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctcatgtgaa 42029441  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaat 160  Q
    ||||||||||| ||| | | |||||||| |||||||| |||||||    
T  42029442 ttttaaccaataaaaaaaagtgtgttgaaaagtgtgtgttagaat 42029486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 29 - 152
Target Start/End: Original strand, 33171608 - 33171735
Alignment:
Q  29 ttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaacca 124  Q
    |||||||||||| || |||||| | |||||||| | || | ||||||||||||||||  | ||     |||||||||||| | |||||||| ||||||||    
T  33171608 ttttcaacacactttctttgattgtttaaaattcatatgggtcccaccaaatcatgtaagacctgtataaatttggtgggacccatgtgaaatttaacca 33171707  T
Q  125 atcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||||| |||||||| ||||||||    
T  33171708 atcaaagagagtgtgttgaaaagtgtgt 33171735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 23 - 182
Target Start/End: Complemental strand, 45300503 - 45300340
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaattt 118  Q
    ||||||||||||| ||||  |||||||| |||||||||| |||| | | ||| ||||| || ||||||||| ||    || ||||| | ||| || ||||    
T  45300503 acacacttttcaatacactctttttgattggttaaaattcacatggattccatcaaattatatgggtcccatatagatttagtgggtcccatatgtattt 45300404  T
Q  119 taaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcat 182  Q
    ||||||||||||  || |||||||| || ||||| |||||| || ||||| |||||||||||||    
T  45300403 taaccaatcaaaaggagtgtgttgaaaaatgtgtgttagaagatgtgttgttaacatttctcat 45300340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 44247538 - 44247664
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| ||||||||| ||  | |||||| |||| ||||| |||| | | ||||||||| ||||||||||||    |||||| |||  | ||||||||    
T  44247538 aacacacatttttcaacaaactatctttgattggttgaaattcacatgggttccaccaaattatgtgggtcccatacaaatttgatggatcccatgtgaa 44247637  T
Q  116 ttttaaccaatcaaagagaatgtgttg 142  Q
    ||||||||||||||||||| |||||||    
T  44247638 ttttaaccaatcaaagagagtgtgttg 44247664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 4237375 - 4237270
Alignment:
Q  34 aacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc----caaatttggtgggcctcatgtgaattttaaccaatcaa 129  Q
    ||||||| |||||||||  ||||||||| |||| | | ||||||||||||||||||||    ||||||||||||  | ||||| ||||||||||||||||    
T  4237375 aacacactttttttgattagttaaaattcacatgggtaccaccaaatcatgtgggtcccatacaaatttggtggatcccatgtaaattttaaccaatcaa 4237276  T
Q  130 agagaa 135  Q
    | ||||    
T  4237275 aaagaa 4237270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 18719734 - 18719854
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattt 118  Q
    ||||| ||||||||||||  |||||||| |||||||||| |||    | |||||||||||||||||||||    ||||||| |||| ||||||| || ||    
T  18719734 acacatttttcaacacactctttttgattggttaaaattcacacgagttccaccaaatcatgtgggtcccatataaatttgatgggtctcatgt-aaatt 18719832  T
Q  119 taaccaatcaaagagaatgtgt 140  Q
    |||||||||||||||| |||||    
T  18719833 taaccaatcaaagagagtgtgt 18719854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 1469863 - 1469751
Alignment:
Q  35 acacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaa 130  Q
    |||||| |||||| || |||||||||| |||| | |||||| ||||||||||||||||    |||||||||||    ||||||||||||||||||| |||    
T  1469863 acacacttttttttattggttaaaattcacatggatcccacaaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaa 1469764  T
Q  131 gagaatgtgttga 143  Q
     ||| ||||||||    
T  1469763 tagagtgtgttga 1469751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 109 - 184
Target Start/End: Original strand, 44487245 - 44487320
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatat 184  Q
    ||||||||||||||| |||||| ||| ||| || | ||||||||  || |||||||||||||||||||||||||||    
T  44487245 atgtgaattttaaccgatcaaaaagagtgtattaaaaagtgtgtggtaaaatatatgttgctaacatttctcatat 44487320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 41496105 - 41496035
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttct 179  Q
    |||||||||||||||||||||||| | ||| |||| |||||||| ||| ||||||||||| || |||||||    
T  41496105 atgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatatatgttgttaccatttct 41496035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 42094282 - 42094362
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||| | ||||||||||||||||||||||||||  |||||||| |||||||| ||| ||| | |||||||| ||||    
T  42094282 atttggtgggac-catgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcatt 42094362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 2683516 - 2683444
Alignment:
Q  19 aaacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc 91  Q
    ||||||||||||||||  ||||  |||||||| |||||||||||| || | | ||||||||||||||||||||    
T  2683516 aaacacacacttttcacgacactctttttgattggttaaaatttatatgggttccaccaaatcatgtgggtcc 2683444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 180
Target Start/End: Original strand, 12703568 - 12703636
Alignment:
Q  112 tgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||||||||||| ||||||||| |||||||||| || ||| ||||| |||||||||| ||| ||||||||    
T  12703568 tgaattttaactaatcaaagaaaatgtgttgaaaaatgtatattaaaatatatgttactagcatttctc 12703636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 16209437 - 16209378
Alignment:
Q  93 aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||||||  ||||||||||||||||||||| ||||||| |||||||  ||||||||    
T  16209437 aaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgt 16209378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 109 - 192
Target Start/End: Original strand, 35715066 - 35715149
Alignment:
Q  109 atgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctcatatacatttaa 192  Q
    |||| ||||||||||||||||||||| ||| |||| |||||||| ||| ||| | |||||||  |||||||| |||| ||||||    
T  35715066 atgtaaattttaaccaatcaaagagagtgtattgaaaagtgtgtcttaaaatgtgtgttgctggcatttctcttatatatttaa 35715149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 12779587 - 12779481
Alignment:
Q  73 caccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttg 168  Q
    |||||||||||||||||| ||    ||||||||||  | ||||||||||||||||||||||| |||||||||||| || ||| | ||||||  | |||||    
T  12779587 caccaaatcatgtgggtcacatatgaatttggtggatcccatgtgaattttaaccaatcaaa-agaatgtgttgaaaaatgtatgttagaaggtgtgttg 12779489  T
Q  169 ctaacatt 176  Q
    ||| ||||    
T  12779488 ctagcatt 12779481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 33069169 - 33069213
Alignment:
Q  22 cacacacttttcaacacacattttttgatcggttaaaatttacat 66  Q
    ||||||||||||||||||| || ||||||||||||||||| ||||    
T  33069169 cacacacttttcaacacactttctttgatcggttaaaattcacat 33069213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 37810153 - 37810282
Alignment:
Q  27 acttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatc-atgtgggtccca---aatttggtgggcctcatgtgaattttaac 122  Q
    ||||||||||||||  | |||||| ||||| |||| |||| |  ||||||||||  || |||| ||||   ||||||||||| | |||||||||||||||    
T  37810153 acttttcaacacactctctttgattggttataattcacatgggacccaccaaatttatatgggacccatctaatttggtgggacccatgtgaattttaac 37810252  T
Q  123 caatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||| || |||| ||  ||||||||    
T  37810253 caatcaaagtgagtgtgatggaaagtgtgt 37810282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 17383849 - 17383774
Alignment:
Q  70 tcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgtt 141  Q
    ||||||||||| ||||||||||||    ||||||||||| | ||| ||| ||||||||||| ||||||| ||||||    
T  17383849 tcccaccaaattatgtgggtcccatagaaatttggtgggacccatatgacttttaaccaataaaagagagtgtgtt 17383774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 18719791 - 18719712
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||  ||| ||||||||||||||||||||| ||| |||||||| || ||||  ||||||| | |||||||| ||||    
T  18719791 atttggtggaactcgtgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtg--ttagaatgtgtgttgctagcatt 18719712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 42029481 - 42029435
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacat 66  Q
    ||||||||||||||||||||| |||||| || |||||||||| ||||    
T  42029481 aacacacacttttcaacacacttttttttattggttaaaattcacat 42029435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 1930670 - 1930743
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca 93  Q
    |||||||| ||||||| ||||  |||||||| |||||||||| |||||  | ||| ||||| ||||||||||||    
T  1930670 aacacacatttttcaagacactctttttgattggttaaaattcacatatgttccatcaaattatgtgggtccca 1930743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 3466479 - 3466552
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctca 181  Q
    ||||||||||||||||||||||||||| | ||||   |||||||| ||| ||| | |||||||| |||| ||||    
T  3466479 catgtgaattttaaccaatcaaagagactatgtttgaaagtgtgtgttaaaatgtgtgttgctagcattcctca 3466552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 44487213 - 44487176
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaaga 132  Q
    |||||||| | |||||||||||||||||||||||||||    
T  44487213 atttggtgagactcatgtgaattttaaccaatcaaaga 44487176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 15194624 - 15194519
Alignment:
Q  70 tcccaccaaatcatgtgggtcccaaat----ttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatg 165  Q
    |||||||||||||||| ||||||| ||    |||||| | | ||||||| ||||||||||||||| ||| |||| ||| |||||| | ||| ||| | ||    
T  15194624 tcccaccaaatcatgtcggtcccatatatatttggtgcgacccatgtgacttttaaccaatcaaaaagagtgtgctgaaaagtgtatgttaaaatttgtg 15194525  T
Q  166 ttgcta 171  Q
    ||||||    
T  15194524 ttgcta 15194519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 35715109 - 35715053
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaa 79  Q
    ||||||||||||| ||||  | |||||| ||||||||||||||||| ||||| ||||    
T  35715109 acacacttttcaatacactctctttgattggttaaaatttacataggtcccatcaaa 35715053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 45300459 - 45300503
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||||||||||||||| ||| ||| |||| ||||||||    
T  45300459 catgtgaattttaaccaatcaaaaagagtgtattgaaaagtgtgt 45300503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 34504516 - 34504389
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    |||| |||||||||||||||| ||||||||| ||||||||||  ||| | || ||||||||||||||||||||    |||||||||| |   ||||||||    
T  34504516 aacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtgagttccatgtgaa 34504417  T
Q  116 ttttaaccaatcaaagagaatgtgttga 143  Q
    ||||||||||||||| ||| ||||||||    
T  34504416 ttttaaccaatcaaaaagagtgtgttga 34504389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 45 - 180
Target Start/End: Original strand, 35586429 - 35586567
Alignment:
Q  45 tttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgt 140  Q
    |||||| |||||||||| |||  | ||||||||||||||||| ||| ||    ||||||||||| |  ||||||||||||| |||| |||||||||||||    
T  35586429 tttgattggttaaaattcacacgg-tcccaccaaatcatgtgagtctcatataaatttggtgggtcctatgtgaattttaatcaattaaagagaatgtgt 35586527  T
Q  141 tgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    ||| |||||||| ||||||| |||| || |||||||||||    
T  35586528 tgaaaagtgtgtgttagaatgtatgatgttaacatttctc 35586567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 27072825 - 27072970
Alignment:
Q  29 ttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaattttaacca 124  Q
    ||||||||| || |||||| || |||||||||| |  ||| || ||||||||||||||| |||||    ||||||||||| |  |||| |||||||||||    
T  27072825 ttttcaacatacttttttt-attggttaaaattcatgtaggtctcaccaaatcatgtggatcccatataaatttggtgggtccaatgtaaattttaacca 27072923  T
Q  125 atcaaagagaatgtgttgagaagtgtgtattagaatatatgttgcta 171  Q
    |||||| |||||||||||| |||||||| ||| ||||| ||||||||    
T  27072924 atcaaaaagaatgtgttgaaaagtgtgtgttaaaatatgtgttgcta 27072970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 2288599 - 2288763
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    ||||||||||||  |||||||  | |||||| ||||||||||||||| | |  ||||||||||  |||||||||    |||||| |||  | ||||||||    
T  2288599 aacacacactttcgaacacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttgatggatcccatgtgaa 2288698  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||||||||||   |||||| |||||| | ||||||| | |||||||| ||||||||    
T  2288699 ttttaaccaatcaaagagagattgttgaaaagtgtcttttagaatgtgtgttgctagcatttctc 2288763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 40694752 - 40694589
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc----caaatttggtgggcctcatgtgaa 115  Q
    |||||||||||||||| ||||  ||||| ||  ||||||||| |||| | ||||||||||||||||||||||     | |||||||||| | ||||| ||    
T  40694752 aacacacacttttcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttggtgggtcgcatgttaa 40694653  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttct 179  Q
    ||||||||||||||| ||| |||||||  || ||||| ||| ||  | |||||||| |||||||    
T  40694652 ttttaaccaatcaaatagattgtgttgtaaaatgtgtgttaaaacgtgtgttgctagcatttct 40694589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 40176033 - 40175896
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaa 115  Q
    ||||||||||||| |||||||   |||| || |||||||||| |||| | ||||||||||| |||||||||||    |||||||||||  | ||||||||    
T  40176033 aacacacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatcccatgtgaa 40175934  T
Q  116 ttttaaccaatcaaagagaa-tgtgttgagaagtgtgt 152  Q
    ||||||||||| ||| | || |||||||| ||||||||    
T  40175933 ttttaaccaataaaaaaaaagtgtgttgaaaagtgtgt 40175896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 8402615 - 8402483
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||||||||||||||||  | |||||| |||||||| |  ||| |  |||||||||||||||||| ||||    |||||| |||| | ||||||||    
T  8402615 aacacacacttttcaacacac--tatttgattggttaaaactctcatgggccccaccaaatcatgtgggacccatattaatttgttgggacccatgtgaa 8402518  T
Q  116 ttttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||| |||||||||||  |||||||| ||||||||    
T  8402517 ttttaaacaatcaaagag--tgtgttgaaaagtgtgt 8402483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 20271104 - 20271177
Alignment:
Q  107 tcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||||||| ||||||||||| |||||||| ||||| || ||| ||| | |||||||||||||||||    
T  20271104 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgctaacatttctc 20271177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 21057732 - 21057805
Alignment:
Q  107 tcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||||||||| ||||||||||| |||||||| ||||| || ||| ||| | |||||||||||||||||    
T  21057732 tcatgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgtgttgctaacatttctc 21057805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 36009900 - 36009982
Alignment:
Q  94 aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||||||  |||||||| ||| ||| | |||||||| ||||    
T  36009900 aatttggtgggtgtcatgtgaattttaaccaaccaaagagagtgtgttggaaagtgtgtgttaaaatgtttgttgctagcatt 36009982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 40696201 - 40696351
Alignment:
Q  33 caacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtcc----caaatttggtgggcctcatgtgaattttaaccaatca 128  Q
    ||||||||  ||||||||  ||||||||| |||| | |||||||||||||||||||| |     | |||||||||| | ||||| ||||||||||||| |    
T  40696201 caacacactctttttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgggtcgcatgttaattttaaccaatga 40696300  T
Q  129 aagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttct 179  Q
    |||||| |||||||  || ||||| ||| ||  | |||||||| |||||||    
T  40696301 aagagattgtgttgcaaaatgtgtgttaaaacgtgtgttgctagcatttct 40696351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 26018601 - 26018476
Alignment:
Q  20 aacacacacttttcaacacacatttt--ttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtg 113  Q
    |||||||| ||| ||||||||| | |  ||||| |||||||||| |||| | ||||| ||||| |||||||||||    |||||||||||| |||  |||    
T  26018601 aacacacattttccaacacacactctccttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtgggtctc--gtg 26018504  T
Q  114 aattttaaccaatcaaagagaatgtgtt 141  Q
    |||||||||||||||| |||| ||||||    
T  26018503 aattttaaccaatcaacgagagtgtgtt 26018476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Complemental strand, 2288646 - 2288584
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgct 170  Q
    ||||| ||||||||||||||||||||| ||||||   |||||||| ||||||||| |||||||    
T  2288646 catgtaaattttaaccaatcaaagagagtgtgttcgaaagtgtgtgttagaatatgtgttgct 2288584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 38357629 - 38357543
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctca 181  Q
    |||||||||| ||||||||| ||| ||| ||||||||||| |||||||  ||||||||  |||||| | |||||||| |||| ||||    
T  38357629 atttggtgggtctcatgtgagtttcaactaatcaaagagagtgtgttggaaagtgtgtgctagaatgtgtgttgctagcattcctca 38357543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 180
Target Start/End: Complemental strand, 42072720 - 42072637
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatttctc 180  Q
    |||||||||| | ||||||||| ||||||||||||||||| ||||||  ||||||||| ||| ||| |  ||||||| ||||||||    
T  42072720 atttggtgggacccatgtgaatgttaaccaatcaaagagagtgtgtt--gaagtgtgtgttaaaatgtgcgttgctagcatttctc 42072637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 40566535 - 40566616
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||| | ||||||||||||||||||||||||| |||  ||||||| || | ||| ||| ||| | |||||||||||||    
T  40566535 atttggtgagactcatgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgtgttgctaacatt 40566616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 27072954 - 27072894
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaat 80  Q
    ||||||||||||||||||||   |||||||| ||||||||||||||| |  ||||||||||    
T  27072954 aacacacacttttcaacacattctttttgattggttaaaatttacattggacccaccaaat 27072894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 2478534 - 2478484
Alignment:
Q  43 tttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca 93  Q
    ||||| |||||||||||||||||| | |||||||||||||| || ||||||    
T  2478534 ttttttatcggttaaaatttacatgggtcccaccaaatcatctgtgtccca 2478484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 133
Target Start/End: Original strand, 4994205 - 4994272
Alignment:
Q  70 tcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaatcaaagag 133  Q
    |||||||||||||||||||||||    |||||| ||||| |||||   ||||||||||||||||||||    
T  4994205 tcccaccaaatcatgtgggtcccatataaattttgtgggtctcatacaaattttaaccaatcaaagag 4994272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 30262820 - 30262770
Alignment:
Q  93 aaatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttga 143  Q
    |||||||||||| ||||| | ||||||||||||| ||| ||||||||||||    
T  30262820 aaatttggtgggactcatataaattttaaccaataaaaaagaatgtgttga 30262770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 126
Target Start/End: Original strand, 42072671 - 42072770
Alignment:
Q  31 ttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccc----aaatttggtgggcctcatgtgaattttaaccaat 126  Q
    ||||||||||  | |||||| |||||| ||| |||| | |||||||||||||| |||||| |    |||||||||||| | ||||| |||||||||||||    
T  42072671 ttcaacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatataaatttggtgggtcccatgtaaattttaaccaat 42072770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 8402483 - 8402636
Alignment:
Q  23 acacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatca-tgtgggtcccaaat---ttggtgggcctcatgtgaattt 118  Q
    ||||||||||||||||||  | |||||| | |||||||| |||| | ||||| ||||| | | ||||||||| ||   |||||||| | |||| || |||    
T  8402483 acacacttttcaacacac--tctttgattgtttaaaattcacatgggtcccaacaaattaatatgggtcccacatgatttggtggggcccatgagagttt 8402580  T
Q  119 taaccaatcaaagagaatgtgttgagaagtgtgtattagaatatatgttgctaacatt 176  Q
    |||||||||||| ||  |||||||| |||||||| ||| ||| | |||||||| ||||    
T  8402581 taaccaatcaaatag--tgtgttgaaaagtgtgtgttaaaatgtgtgttgctagcatt 8402636  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 38835060 - 38835003
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||||||| | | |||||||||||||  ||||||||||||||||||||| | ||||||    
T  38835060 atttggtgagacccatgtgaattttagtcaatcaaagagaatgtgttgaaatgtgtgt 38835003  T

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Target: scaffold0137 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 8231 - 8316
Alignment:
Q  70 tcccaccaaatcatgtgggtccca---aatttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||||||||||||||||   |||||||||||  |||||||||||||| ||||||||| |||||| ||||| ||||||||    
T  8231 tcccaccaaatcatgtgggtcccacataatttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgt 8316  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 136460 - 136344
Alignment:
Q  20 aacacacacttttcaacacacattttttgatcggttaaaatttacatagctcccaccaaatcatgtgggtccca----aatttggtgggcctcatgtgaa 115  Q
    |||||||| ||||||||||||  |||||||| |||||||| | ||||   ||||| ||||||||||| | ||||    |||||| |||| ||||| ||||    
T  136460 aacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttgatgggactcatatgaa 136361  T
Q  116 ttttaaccaatcaaaga 132  Q
    |||||||||||||||||    
T  136360 ttttaaccaatcaaaga 136344  T

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Target: scaffold0620 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 9238 - 9282
Alignment:
Q  108 catgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    ||||||||||||||||||||||||||| | |||||| ||||||||    
T  9238 catgtgaattttaaccaatcaaagagattatgttgaaaagtgtgt 9282  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 201036 - 201093
Alignment:
Q  95 atttggtgggcctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgtgt 152  Q
    |||| ||||| | ||||||||| ||||| ||||||||||| |||||||| ||||||||    
T  201036 atttagtgggacacatgtgaatcttaacaaatcaaagagagtgtgttgataagtgtgt 201093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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