View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17771_low_4 (Length: 519)

Name: NF17771_low_4
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17771_low_4
NF17771_low_4
[»] chr2 (15 HSPs)
chr2 (1-504)||(30793011-30793511)
chr2 (135-504)||(30177264-30177644)
chr2 (191-504)||(30070493-30070813)
chr2 (118-504)||(30281965-30282362)
chr2 (253-504)||(30254391-30254647)
chr2 (118-504)||(30181479-30181877)
chr2 (381-492)||(30025385-30025496)
chr2 (381-492)||(30035201-30035312)
chr2 (381-492)||(30116626-30116737)
chr2 (381-492)||(30131383-30131494)
chr2 (381-492)||(30229339-30229450)
chr2 (391-456)||(30236642-30236707)
chr2 (377-435)||(30032422-30032480)
chr2 (377-435)||(30226560-30226618)
chr2 (377-435)||(30105184-30105242)
[»] chr1 (1 HSPs)
chr1 (321-462)||(12629044-12629187)


Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Complemental strand, 30793511 - 30793011
Alignment:
Q  1 aaagaaagaagagatgttaagctgaaacataaaaaaggtaatgtattatgtatagcaatgaaacagtaaaatattgaagaacatgaaatattatttatta 100  Q
    ||||||||||||||||||||||||||||| ||||||    | |||  ||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  30793511 aaagaaagaagagatgttaagctgaaacaaaaaaaa----aagta--atgtatagcaatgaaacagtaaaatattgaagaacatgaaatattatt----a 30793422  T
Q  101 acgaaaaagggtgaaagaaagccccatgtgctgattctgaattaccatgcggttgtgaagaattacttgagccttcttcaaattttgacgacaaaatcaa 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30793421 acgaaaaagggtgaaagaaagccccatgtgctgtttctgaattaccaggcggttgttaagaattacttgagccttcttcaaattttgacgacaaaatcaa 30793322  T
Q  201 tcatccttagagtcctggatattcacaaacaagaaatcgaaataacaatatgag--aatggaagccgtaatattcgaattatgattggagatattttata 298  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||    
T  30793321 tcatccttagagtcctggatattcacaaacaagaaattgaaataacaatatgagccaatggaagccgtaatattcgaattatgattggagatattgtata 30793222  T
Q  299 aac-----attaccgttttagctacggattttcttattgtactatttaggtcaccattccaatgccattcatcttgttccttaacatgtacttctatgag 393  Q
    |||     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30793221 aacgtaacattaccgttttagctacgaattttcttattgtactatttaggtcaccattccaatgccattcatcttgttccttaacatgtacttctatgag 30793122  T
Q  394 ctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaagccatgtcttccc 493  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30793121 ctttggtgcgttcaacgctccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaagccatgtcttccc 30793022  T
Q  494 atgcaaaaact 504  Q
    |||||||||||    
T  30793021 atgcaaaaact 30793011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 135 - 504
Target Start/End: Complemental strand, 30177644 - 30177264
Alignment:
Q  135 ttctgaattaccatgcggttgtgaagaattac------ttgagccttcttcaaattttgacgacaaaatcaatcatccttagagtcctggatattcacaa 228  Q
    ||||||||||||| || |||||||||||||||      ||||||||||||| |||||||| |||||| ||||||| ||||||||| ||||||| || |||    
T  30177644 ttctgaattaccaagcagttgtgaagaattacagctacttgagccttcttcgaattttgaggacaaactcaatcacccttagagttctggatactcgcaa 30177545  T
Q  229 acaagaaatcgaaataacaatatgagaatggaagccgtaatattcgaattatgattggagatat------tttataaacattaccgttttagctacggat 322  Q
    ||||||||  | |  |||||| |||||||| ||||  ||| ||| |||| ||||||||||| ||      | |||| ||||||||| |||||||||  ||    
T  30177544 acaagaaaaggcac-aacaatgtgagaatgcaagctataacatttgaatcatgattggagacatagattttgtatagacattaccggtttagctacaaat 30177446  T
Q  323 tttcttattgtactatttaggtcaccattccaatgccattcatcttgttccttaacatgtacttctatgagctttggtgcgttcaacactccatgtgaga 422  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||  |||||| ||||||||| || ||||||||||||| |||||||||||||||||||    
T  30177445 tttcttatagtagtattaaggtcaccattccaatgccattcatctccttcctttacatgtactgctctgagctttggtgcattcaacactccatgtgaga 30177346  T
Q  423 aagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaagccatgtcttcccatgcaaaaact 504  Q
    ||||||||||||| |||||||||| ||||||||| ||||  ||  | |||||||||| || |||| ||||| ||||||||||    
T  30177345 aagtttccatcatgggacaatctactacaaataacttctttagtagcggaaatttgaggctatgttttcccttgcaaaaact 30177264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 191 - 504
Target Start/End: Complemental strand, 30070813 - 30070493
Alignment:
Q  191 acaaaatcaatcatccttagagtcctggatattcacaaacaagaaatcgaaataacaatatgagaatggaagccg-taatattcgaattatgattggaga 289  Q
    ||||| ||||||||||||||||| ||||||||||| ||||||||||  | |  |||||| |||||||| ||  || ||| | | || || ||||||||||    
T  30070813 acaaattcaatcatccttagagttctggatattcataaacaagaaaaagcac-aacaatgtgagaatgcaaagcgataacaattgatttgtgattggaga 30070715  T
Q  290 ta-------ttttataaacattaccgttttagctacggattttcttattgtactatttaggtcaccattccaatgccattcatcttgttccttaacatgt 382  Q
    ||       || |||| ||||||||||||| |||||  |||||||||| ||| |||| | |||||||||||||||||||||||||||||| || |||||     
T  30070714 taatcgattttgtatagacattaccgtttttgctacaaattttcttatagtagtattaatgtcaccattccaatgccattcatcttgttcattcacatgc 30070615  T
Q  383 acttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaagc 482  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| |||||||| ||||||||||||||||    
T  30070614 actgctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcacgggacaatctactacaaataacttctgcagttgtggaaatttgaagc 30070515  T
Q  483 catgtcttcccatgcaaaaact 504  Q
    ||||||| ||| ||||||||||    
T  30070514 catgtctacccttgcaaaaact 30070493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 118 - 504
Target Start/End: Complemental strand, 30282362 - 30281965
Alignment:
Q  118 aaagccccatgtgctgattctgaattaccatgcggttgtgaagaatta----cttgagccttc-ttcaaattttgacgacaaaatcaatcatccttagag 212  Q
    ||||||| |||||||||||||||||||||| | ||||| || ||||||    ||||||||||| |||||||||||| |||||| ||| ||||||||||||    
T  30282362 aaagcccaatgtgctgattctgaattaccaggtggttgcgaggaattatcgacttgagccttcattcaaattttgaggacaaactcattcatccttagag 30282263  T
Q  213 tcctggatattcacaaacaagaaatcgaaataacaatatgagaatggaagccgtaatattcgaattatgattggagat-----attttataaacattacc 307  Q
    | ||||||||||| ||||||||||  | || |||| | |||||||| || |  ||  ||| |||| ||||||||||||     ||||  |||||||||||    
T  30282262 ttctggatattcataaacaagaaaaagcaacaacagtgtgagaatgcaaacaatagcatttgaatcatgattggagatgatcaatttggtaaacattacc 30282163  T
Q  308 gtttta-gctacggattttcttattgtactatttaggtcaccattccaatgccattcatcttgttccttaacatgtacttctatgagctttggtgcgttc 406  Q
     ||||  ||  |  |||||||||| ||| |||| | ||||||||||||||| |||||| |||||  ||| ||||||||| ||   ||||| ||||| |||    
T  30282162 ttttttcgcagcaaattttcttatagtagtattaatgtcaccattccaatgacattcaccttgtctcttcacatgtactgctcgaagcttaggtgcattc 30282063  T
Q  407 aacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaagccatgtcttcccatgcaaaaact 504  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||||| ||| ||||  |||||||||||||||||||| ||||| ||||||||||    
T  30282062 aacactccatgtgagaaagtttccatcatgggacaatttattacaaataacttcggcagtagtggaaatttgaagccatgttttcccttgcaaaaact 30281965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 253 - 504
Target Start/End: Complemental strand, 30254647 - 30254391
Alignment:
Q  253 agaatggaagccgtaatattcgaattatgattggagata-----ttttataaacattaccgttttagctacggattttcttattgtactatttaggtcac 347  Q
    |||||| ||||| ||| ||| |||||||||| |||||||     |||| || | |||||| ||||||||||  |||||||||||| | |||| |||||||    
T  30254647 agaatgcaagccataacatttgaattatgatcggagataatcaattttgtatatattaccattttagctacatattttcttattgcagtattaaggtcac 30254548  T
Q  348 cattccaatgccattcatcttgttccttaacatgtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctat 447  Q
    | ||||||||||| |||||||||||||| |||| || | || |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||     
T  30254547 cgttccaatgccagtcatcttgttcctttacatttaatgctctgagctttggtgcgtttaacactccgtgtgagaaagtttccatcattggacaatctac 30254448  T
Q  448 tacaaataagttctgcagctgtggaaatttgaagccatgtcttcccatgcaaaaact 504  Q
    ||| ||||| ||||||||  | |||||||| | ||||||||||||| ||||||||||    
T  30254447 tacgaataacttctgcagaagcggaaattttaggccatgtcttcccttgcaaaaact 30254391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 118 - 504
Target Start/End: Original strand, 30181479 - 30181877
Alignment:
Q  118 aaagccccatgtgctgattctgaattaccatgcggttgtgaagaat----tacttgagccttct-tcaaattttgacgacaaaatcaatcatccttagag 212  Q
    ||||||| |||||||  |||| |||||||||| ||||| || ||||    |||||||||||||  |||| |||||| ||||||  |||||||||||||||    
T  30181479 aaagcccaatgtgctagttctaaattaccatgtggttgagacgaatcatctacttgagccttcaatcaagttttgaggacaaacacaatcatccttagag 30181578  T
Q  213 tcctggatattcacaaacaaga-aatcgaaataacaatatgagaatggaagccgtaatattc-gaattatgattggagata-----ttttataaacatta 305  Q
      |||||||||||  ||||||| ||   ||| | |||  |||||||| ||||| ||| |||  |||| ||||| |||||||     |||| || | ||||    
T  30181579 ctctggatattcatgaacaagagaaaaaaaacagcaaagtgagaatgcaagccataacattttgaatcatgatcggagataattgattttgtatatatta 30181678  T
Q  306 ccgttttagctacggattttcttattgtactatttaggtcaccattccaatgccattcatcttgttccttaacatgtacttctatgagctttggtgcgtt 405  Q
    ||||||| |||||  ||| | |||| ||| | || |  ||||||||||||||||||||||||| |||| | ||||||||| || ||||| ||||||||||    
T  30181679 ccgttttcgctactaattgttttatagtagtgttaacatcaccattccaatgccattcatcttcttccctcacatgtactgctctgagccttggtgcgtt 30181778  T
Q  406 caacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaagccatgtcttcccatgcaaaaact 504  Q
    |||||||||||||||||||||||||||||  |||||||||| |||||||||  ||  |||| |||||||||||||||||||||||||| ||||||||||    
T  30181779 caacactccatgtgagaaagtttccatcacgggacaatctactacaaataacatcctcagcagtggaaatttgaagccatgtcttcccttgcaaaaact 30181877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 492
Target Start/End: Complemental strand, 30025496 - 30025385
Alignment:
Q  381 gtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaa 480  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||| | ||||||||||||  ||  ||   |||||||||||||    
T  30025496 gtacttctatgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaa 30025397  T
Q  481 gccatgtcttcc 492  Q
    | ||||||||||    
T  30025396 gtcatgtcttcc 30025385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 30035201 - 30035312
Alignment:
Q  381 gtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaa 480  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||| | ||||||||||||  ||  ||   |||||||||||||    
T  30035201 gtacttctatgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaa 30035300  T
Q  481 gccatgtcttcc 492  Q
    | ||||||||||    
T  30035301 gtcatgtcttcc 30035312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 30116626 - 30116737
Alignment:
Q  381 gtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaa 480  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||| | ||||||||||||  ||  ||   |||||||||||||    
T  30116626 gtacttctatgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaa 30116725  T
Q  481 gccatgtcttcc 492  Q
    | ||||||||||    
T  30116726 gtcatgtcttcc 30116737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 30131383 - 30131494
Alignment:
Q  381 gtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaa 480  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||| | ||||||||||||  ||  ||   |||||||||||||    
T  30131383 gtacttctatgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaa 30131482  T
Q  481 gccatgtcttcc 492  Q
    | ||||||||||    
T  30131483 gtcatgtcttcc 30131494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 30229339 - 30229450
Alignment:
Q  381 gtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataagttctgcagctgtggaaatttgaa 480  Q
    ||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||| | ||||||||||||  ||  ||   |||||||||||||    
T  30229339 gtacttctatgagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataacgtcctcaatagtggaaatttgaa 30229438  T
Q  481 gccatgtcttcc 492  Q
    | ||||||||||    
T  30229439 gtcatgtcttcc 30229450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 30236642 - 30236707
Alignment:
Q  391 gagctttggtgcgttcaacactccatgtgagaaagtttccatcattggacaatctattacaaataa 456  Q
    ||||||||||||||||||||  |||| |||||||||||||||||| ||||| | ||||||||||||    
T  30236642 gagctttggtgcgttcaacataccatttgagaaagtttccatcatgggacagtttattacaaataa 30236707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 30032480 - 30032422
Alignment:
Q  377 acatgtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcat 435  Q
    ||||||||| || |||| ||||||||| |||||||||||| |||||||||||| |||||    
T  30032480 acatgtactgctctgagttttggtgcgctcaacactccatttgagaaagtttctatcat 30032422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 30226618 - 30226560
Alignment:
Q  377 acatgtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcat 435  Q
    ||||||||| || |||| ||||||||| |||||||||||| |||||||||||| |||||    
T  30226618 acatgtactgctctgagttttggtgcgctcaacactccatttgagaaagtttctatcat 30226560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 435
Target Start/End: Complemental strand, 30105242 - 30105184
Alignment:
Q  377 acatgtacttctatgagctttggtgcgttcaacactccatgtgagaaagtttccatcat 435  Q
    ||||||||| ||  ||| ||||||||| |||||||||||| |||||||||||| |||||    
T  30105242 acatgtactgctccgagttttggtgcgctcaacactccatttgagaaagtttctatcat 30105184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 462
Target Start/End: Original strand, 12629044 - 12629187
Alignment:
Q  321 attttcttattgtactatttaggtcaccattccaatgccattcatcttgttccttaacatgtacttctatgagctttggtgcgttcaacactccatgtga 420  Q
    |||||||||| ||| |||| | ||||||||| ||||| |||||| |||||| ||| ||||||| | ||   ||||||||||| |||||||||||||| ||    
T  12629044 attttcttatggtagtattaatgtcaccatttcaatggcattcaccttgtttcttcacatgtattgctcgaagctttggtgcattcaacactccatgcga 12629143  T
Q  421 gaaagtttccatcattggacaatcta--ttacaaataagttctg 462  Q
    ||||||||||||||| ||||||| ||  |||||||||| |||||    
T  12629144 gaaagtttccatcatgggacaatttatgttacaaataacttctg 12629187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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