View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17771_low_8 (Length: 426)
Name: NF17771_low_8
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17771_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 6266203 - 6265809
Alignment:
| Q |
13 |
gcaaaggttaagtcgaactctagaaactttaaattggttccagttgcttaataaaattaccattaccaaaaggattagagaagagtataaacaaccctta |
112 |
Q |
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| T |
6266203 |
gcaaaggttaagtcgaactctagaaactttaaattggttccagttgcttaataaaattaccattaccaaaaggattagagaagagtataaacaaccatta |
6266104 |
T |
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| Q |
113 |
aacaaacaaaatataaacggtcaatataagatctgaaaaagaggaacaatgcgtcttttaaattgactgattacaattatcattttagtacaatttttta |
212 |
Q |
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| T |
6266103 |
aacaaacaaaatataaacggtcaatataagatccgaaaaaggggaacaatacgtcttttaaattgactgattacaattatcattttagtacaatttttta |
6266004 |
T |
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| Q |
213 |
ttctaagtgagaatattctgcatatgttcctctgagttggagaggatgcaaatggagaagagatagggatagaattgtgtgtgaaaatgtgttcatgttc |
312 |
Q |
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| T |
6266003 |
ttctaagagagaatattctgcatatgttcctctgagttggagaggatgcaaatggagaagagatagggatagaattgtgtgtgaaaatgtgttcatgttc |
6265904 |
T |
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| Q |
313 |
tcattttttatttcaacatattcaaaccattaactaaatctaatggtaattttttaatgttgattagtgagggacttagttaagcacttgcccta |
407 |
Q |
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| T |
6265903 |
tcattttttatttcaacatattcaaaccattaactaaatctaatggtaattttttaatgttgattagtgagggacttagttaagcacttgcccta |
6265809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 365
Target Start/End: Original strand, 34942114 - 34942192
Alignment:
| Q |
287 |
ttgtgtgtgaaaatgtgttcatgttctcattttttatttcaacatattcaaaccattaactaaatctaatggtaatttt |
365 |
Q |
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| T |
34942114 |
ttgtgtgtgaacatgtgttgatggtctcattttttattttaataaatctaaaccattaattagatcgaatggtattttt |
34942192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 269 - 319
Target Start/End: Original strand, 34752091 - 34752141
Alignment:
| Q |
269 |
gaagagatagggatagaattgtgtgtgaaaatgtgttcatgttctcatttt |
319 |
Q |
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| T |
34752091 |
gaagaaatagaggtagaattgtgtgtgcaaatgtattcatgttctcatttt |
34752141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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