View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17771_low_9 (Length: 419)

Name: NF17771_low_9
Description: NF17771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17771_low_9
NF17771_low_9
[»] chr5 (12 HSPs)
chr5 (19-411)||(22865674-22866072)
chr5 (62-275)||(24546391-24546610)
chr5 (66-399)||(25537330-25537669)
chr5 (128-404)||(25828877-25829159)
chr5 (27-187)||(25333880-25334040)
chr5 (19-225)||(31202155-31202361)
chr5 (224-301)||(24647311-24647388)
chr5 (270-361)||(8938873-8938966)
chr5 (270-359)||(16621173-16621262)
chr5 (335-403)||(31202530-31202598)
chr5 (246-361)||(22903056-22903171)
chr5 (313-361)||(4477161-4477209)
[»] chr7 (11 HSPs)
chr7 (26-402)||(13291910-13292292)
chr7 (25-402)||(16986878-16987261)
chr7 (239-398)||(34854169-34854328)
chr7 (135-351)||(9135257-9135479)
chr7 (271-400)||(9867977-9868106)
chr7 (246-355)||(39879356-39879465)
chr7 (246-386)||(5863125-5863265)
chr7 (270-356)||(12644753-12644839)
chr7 (227-344)||(18773961-18774078)
chr7 (246-366)||(10287609-10287729)
chr7 (236-300)||(5929014-5929078)
[»] scaffold0002 (2 HSPs)
scaffold0002 (83-404)||(379636-379963)
scaffold0002 (224-305)||(121002-121083)
[»] chr4 (11 HSPs)
chr4 (83-397)||(15741997-15742317)
chr4 (22-301)||(14601798-14602083)
chr4 (134-410)||(16012367-16012647)
chr4 (70-350)||(15514392-15514678)
chr4 (144-359)||(5518505-5518726)
chr4 (224-356)||(12683753-12683885)
chr4 (246-359)||(47253242-47253355)
chr4 (161-216)||(23350600-23350655)
chr4 (313-355)||(3981919-3981961)
chr4 (135-200)||(1638214-1638279)
chr4 (236-292)||(13896482-13896538)
[»] chr6 (22 HSPs)
chr6 (44-402)||(34064117-34064480)
chr6 (52-396)||(9403105-9403450)
chr6 (90-399)||(12449434-12449749)
chr6 (122-410)||(31295418-31295712)
chr6 (22-292)||(19276861-19277135)
chr6 (62-401)||(19730415-19730758)
chr6 (165-300)||(27860874-27861015)
chr6 (224-358)||(22497289-22497423)
chr6 (39-181)||(19723348-19723490)
chr6 (166-341)||(12424241-12424422)
chr6 (239-361)||(16343542-16343664)
chr6 (326-361)||(22692066-22692101)
chr6 (135-218)||(18566769-18566852)
chr6 (246-352)||(20148289-20148393)
chr6 (246-352)||(22184435-22184539)
chr6 (224-303)||(23768214-23768293)
chr6 (20-62)||(18147576-18147618)
chr6 (246-303)||(689870-689927)
chr6 (271-352)||(9277338-9277419)
chr6 (326-411)||(19277175-19277260)
chr6 (246-342)||(14080466-14080561)
chr6 (211-300)||(34187323-34187413)
[»] chr2 (17 HSPs)
chr2 (134-410)||(15390480-15390762)
chr2 (52-396)||(18135799-18136149)
chr2 (52-357)||(19050248-19050559)
chr2 (125-405)||(15825074-15825359)
chr2 (135-402)||(10923061-10923334)
chr2 (129-400)||(29137825-29138103)
chr2 (131-358)||(29710984-29711215)
chr2 (19-172)||(29743882-29744035)
chr2 (144-340)||(24157211-24157413)
chr2 (270-359)||(45714960-45715049)
chr2 (270-410)||(20120261-20120401)
chr2 (135-213)||(30638654-30638732)
chr2 (273-363)||(45258192-45258282)
chr2 (26-200)||(19290597-19290770)
chr2 (224-301)||(24499812-24499889)
chr2 (147-222)||(20120455-20120530)
chr2 (326-363)||(19919159-19919196)
[»] chr1 (14 HSPs)
chr1 (80-356)||(23728661-23728942)
chr1 (53-399)||(16299397-16299739)
chr1 (150-411)||(4601398-4601665)
chr1 (143-401)||(52565502-52565765)
chr1 (254-411)||(14255051-14255208)
chr1 (76-354)||(25408066-25408350)
chr1 (246-361)||(22414738-22414853)
chr1 (165-410)||(21682516-21682767)
chr1 (279-363)||(48637511-48637596)
chr1 (246-301)||(5671793-5671848)
chr1 (246-361)||(16030358-16030473)
chr1 (313-361)||(5459788-5459836)
chr1 (246-346)||(12177364-12177464)
chr1 (40-192)||(14254843-14254995)
[»] scaffold0205 (2 HSPs)
scaffold0205 (19-410)||(22800-23197)
scaffold0205 (227-410)||(10909-11092)
[»] chr3 (17 HSPs)
chr3 (24-399)||(12516110-12516492)
chr3 (128-365)||(14859988-14860231)
chr3 (19-402)||(12731341-12731730)
chr3 (135-410)||(431212-431493)
chr3 (66-400)||(25495863-25496202)
chr3 (19-205)||(12256952-12257138)
chr3 (135-217)||(17485522-17485604)
chr3 (153-356)||(12108387-12108596)
chr3 (246-361)||(28723787-28723902)
chr3 (129-206)||(7835464-7835541)
chr3 (241-358)||(12251954-12252071)
chr3 (313-361)||(21649376-21649424)
chr3 (246-351)||(21342300-21342405)
chr3 (245-301)||(1770848-1770904)
chr3 (326-410)||(21652557-21652641)
chr3 (241-292)||(9781514-9781565)
chr3 (246-301)||(17143762-17143817)
[»] scaffold0380 (1 HSPs)
scaffold0380 (122-393)||(6743-7020)
[»] scaffold0005 (1 HSPs)
scaffold0005 (22-301)||(215295-215580)
[»] chr8 (14 HSPs)
chr8 (151-358)||(24576495-24576708)
chr8 (167-405)||(21416657-21416901)
chr8 (136-289)||(11776140-11776299)
chr8 (271-358)||(17319657-17319747)
chr8 (144-411)||(3459390-3459661)
chr8 (246-352)||(18322915-18323021)
chr8 (19-207)||(24070950-24071138)
chr8 (224-299)||(4565384-4565459)
chr8 (313-410)||(20055493-20055590)
chr8 (313-361)||(15057998-15058046)
chr8 (246-300)||(6928103-6928157)
chr8 (327-361)||(23269209-23269243)
chr8 (270-363)||(13764950-13765043)
chr8 (224-289)||(23243819-23243884)
[»] scaffold0464 (1 HSPs)
scaffold0464 (83-290)||(11550-11759)
[»] scaffold0103 (1 HSPs)
scaffold0103 (75-355)||(40765-41051)
[»] scaffold0074 (1 HSPs)
scaffold0074 (270-392)||(35185-35307)
[»] scaffold0479 (1 HSPs)
scaffold0479 (326-411)||(4953-5038)
[»] scaffold0294 (1 HSPs)
scaffold0294 (162-301)||(165-311)
[»] scaffold0023 (1 HSPs)
scaffold0023 (246-347)||(95823-95924)
[»] scaffold0505 (1 HSPs)
scaffold0505 (246-361)||(7848-7963)
[»] scaffold0140 (1 HSPs)
scaffold0140 (224-395)||(6227-6398)
[»] scaffold0263 (1 HSPs)
scaffold0263 (236-354)||(20500-20618)
[»] scaffold0057 (1 HSPs)
scaffold0057 (248-394)||(73817-73963)
[»] scaffold0259 (1 HSPs)
scaffold0259 (343-393)||(24400-24450)
[»] scaffold0092 (1 HSPs)
scaffold0092 (224-300)||(21609-21685)
[»] scaffold0054 (1 HSPs)
scaffold0054 (246-301)||(68815-68868)
[»] scaffold0291 (1 HSPs)
scaffold0291 (166-358)||(8508-8701)
[»] scaffold0174 (1 HSPs)
scaffold0174 (325-355)||(29368-29398)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 22866072 - 22865674
Alignment:
Q  19 cagaagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaa 118  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||| ||| ||     
T  22866072 cagaagaccaaccacacgttgacatgtggccaaactttcaccgcctcaagactccgcacttaagggagcacgccagcttgcgtgcactattccacataag 22865973  T
Q  119 agtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatat 218  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||| ||||||||||| |||||||||||    
T  22865972 agtgcgccttcgcgcaaggatcaccctacacgtgtcatgctccgtccctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatat 22865873  T
Q  219 gaggg------tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtc 312  Q
     ||||      |||||||| || ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||| |||||| |      
T  22865872 aagggtgaacttgcttcaccctcaaggtacacatcacttttcacaacatttcttacacactttttctcagttccattactaacttgagcgtcaaagtgct 22865773  T
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 411  Q
    ||||| ||||| ||||||||||||||||| ||||||||   |||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||    
T  22865772 aacgtacctgcatgcacctttcgttccactgcgaagacatgtcgccaccgtgccgaaagccgttaccgtcacaccggagcattctctgccgccgttgct 22865674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 62 - 275
Target Start/End: Complemental strand, 24546610 - 24546391
Alignment:
Q  62 cctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctcc 161  Q
    ||||| ||||| |||||||||||||||||||| ||||||||||| || | |||||  || || ||| |||||||||||| ||||||||||||| ||||||    
T  24546610 cctcaggactccgcacttaagggagcacgccaacttgcgtgcaccgtgccacacaggagcgcacctccgcgcaaggatcaccctacacgtgtcttgctcc 24546511  T
Q  162 gtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg-------tgcttcactcttaaggtacacatcacttttc 254  Q
    ||||||||||||| ||||||||||||||||||| ||||||| ||| | ||||||||| ||||       ||||||||  | |||||||||||||| ||||    
T  24546510 gtccctaatcacacgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaactttgcttcaccttcaaggtacacatcac-tttc 24546412  T
Q  255 acaacatttcttatgcactct 275  Q
    |||||| ||||||| ||||||    
T  24546411 acaacacttcttatacactct 24546391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 66 - 399
Target Start/End: Complemental strand, 25537669 - 25537330
Alignment:
Q  66 aagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtcc 165  Q
    ||||||| |||||||||||||||| |||||  |||| |||  | | ||| |  ||  |||| ||||||||||||  ||||| |||| ||||| | |||||    
T  25537669 aagactccgcacttaagggagcacaccagcacgcgtacaccatgccacataggagctcgccctcgcgcaaggattaccctatacgtttcctgattcgtcc 25537570  T
Q  166 ctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaac 259  Q
    ||||||||| | | ||||||| ||||||| || |||||||  | ||||||||| ||||||      |||||| || |||||| |||||||||||||||||    
T  25537569 ctaatcacacgtcacataacctggagacggttttggccaaggcgcgcctatataagggtgaactttcttcaccctcaaggtatacatcacttttcacaac 25537470  T
Q  260 atttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcca 359  Q
    | ||| ||  || ||||||||||||||||||| | ||||||| |   || |  ||||||| |||  ||||||||||||||||||||||||||| |||||     
T  25537469 acttcatacacaatctttctcagttccattacaatcttgagcgttggagtgctaacgtgcttgcaggcacctttcgttccaccgcgaagactcttcgccg 25537370  T
Q  360 ccatgccgaaagccgttaccatcacaccggagcattctct 399  Q
    || ||||  || |||||||| ||||||| |||||||||||    
T  25537369 ccgtgccagaaaccgttaccgtcacaccagagcattctct 25537330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 128 - 404
Target Start/End: Original strand, 25828877 - 25829159
Alignment:
Q  128 tcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg---- 223  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||| |||||||||||||||||||  |||||||||||| |   |||||  |||        
T  25828877 tcgcgcaaggatcgccctacacgtgtcctattccgcccctaatcacacgccgcataacccggagacggctatggccaacacgcttttatatacgggtgaa 25828976  T
Q  224 --tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcct 321  Q
      || ||||| || |||| |||||||||||||||||| | ||||||  |||| ||||||| |||||||| | ||| |||| ||| |  |  |||||||||    
T  25828977 cttgtttcaccctcaagggacacatcacttttcacaatacttcttacacactttttctcaattccattattgactagagcgtcagattgctaacgtgcct 25829076  T
Q  322 gcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccac 404  Q
    |  | ||| ||| |||| |||||||||||| ||||||||| |||||||||  |||||| |||| |  ||| ||||||||||||    
T  25829077 gaatacacattttgttcaaccgcgaagacttatcgccaccgtgccgaaagtagttaccgtcaccctagagtattctctgccac 25829159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 25334040 - 25333880
Alignment:
Q  27 caaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgcc 126  Q
    ||||||||||||||||||||||| | | | |||||||| | | |||||||| |   ||||||||||||||||  ||||| || | |||||||||| ||||    
T  25334040 caaccacacgttgacacgtggcctagcatacactgccttacggctctgcacatgttggagcacgccagcttgaatgcaccgtgccacacaaaagttcgcc 25333941  T
Q  127 ttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataaccc 187  Q
      ||| | |||||| ||||||||||||||| |||| |||||| ||||| ||||||| ||||    
T  25333940 cccgcacgaggatcaccctacacgtgtcctcctccttccctagtcacacgccgcattaccc 25333880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 31202155 - 31202361
Alignment:
Q  19 cagaagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaa 118  Q
    ||||||||||||  |||||| |||||| ||| ||||| ||| |||| ||| ||| |  | | | |||||||| |||||||| ||||| || | || ||||    
T  31202155 cagaagaccaactgcacgttaacacgtagccgaacttacaccgccttaaggctccgtgcctgaaggagcacgtcagcttgcatgcaccgtgccacgcaaa 31202254  T
Q  119 agtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatat 218  Q
    || |||||  ||||| |||||  ||||||||||||| | ||||  ||||||||||| |||||||||||  |||||| ||||| |||||   |||||||||    
T  31202255 agcgcgcccccgcgcgaggattaccctacacgtgtcttcctccacccctaatcacacgccgcataacctagagacggttatgaccaacgtgcgcctatat 31202354  T
Q  219 gagggtg 225  Q
     ||||||    
T  31202355 aagggtg 31202361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 24647388 - 24647311
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||  |||||||| |||||||||||||| | ||||||    
T  24647388 tgcttcacccttaaggtatacatcacttttcacaacacttcttacacactctttttcagttccattactgaattgagc 24647311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 361
Target Start/End: Complemental strand, 8938966 - 8938873
Alignment:
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccg--cgaagactcatcgccacc 361  Q
    |||||||||||||||||| |||| ||| ||||||   || || ||||||||||| |||||||||||||| ||||  | ||||||||||||||||    
T  8938966 cactctttctcagttccaatactgactagagcattggagtgttaacgtgcctgcatgcacctttcgttctaccgcacaaagactcatcgccacc 8938873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 16621262 - 16621173
Alignment:
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcca 359  Q
    |||||||||||||||||| || |  ||||||| |  ||| || ||||||||| | | ||||||||||||||||| |||||||||||||||    
T  16621262 cactctttctcagttccaatattggcttgagcgttgaagtgttaacgtgcctacatacacctttcgttccaccgtgaagactcatcgcca 16621173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 335 - 403
Target Start/End: Original strand, 31202530 - 31202598
Alignment:
Q  335 gttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcca 403  Q
    |||||||||||||||||||||||| || || |  ||| ||||||| ||||||| |||||||||||||||    
T  31202530 gttccaccgcgaagactcatcgccgccgtgtcagaagtcgttaccgtcacaccagagcattctctgcca 31202598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 361
Target Start/End: Complemental strand, 22903171 - 22903056
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||| |  ||| |  ||| ||||| |    ||||||||||||||||||    
T  22903171 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagcgttgaagtgctaacatgcctacgaaaacctttcgttccaccgcg 22903072  T
Q  346 aagactcatcgccacc 361  Q
    || ||||||| |||||    
T  22903071 aaaactcatcaccacc 22903056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 4477209 - 4477161
Alignment:
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 361  Q
    |||||||||||  ||||| ||||| ||||||| ||||||||||||||||    
T  4477209 aacgtgcctgcgggcacccttcgtcccaccgcaaagactcatcgccacc 4477161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 26 - 402
Target Start/End: Original strand, 13291910 - 13292292
Alignment:
Q  26 ccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgc 125  Q
    |||||||||||   |||| ||||| ||||| ||| |||||||| ||| |||  ||||| |||||||||||||||||| || || | |||||  || ||||    
T  13291910 ccaaccacacgccaacacatggccgaacttgcaccgcctcaaggctccgcatctaaggaagcacgccagcttgcgtgaaccgtgccacacaggagcgcgc 13292009  T
Q  126 cttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg-- 223  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||||||||| | ||      
T  13292010 cttcgcgcaaggatcaccctacacgtgtcatgctccgtccctaaccacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtg 13292109  T
Q  224 ----tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgc 319  Q
        |||||||| || ||||||||||||||||||||||||| ||||||  |||||||| |||||| ||||||| |||||||| | | || |  ||||| |    
T  13292110 aacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttttcagtttcattactgacttgagcgttagagtgctaacgtac 13292209  T
Q  320 ctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 402  Q
    ||||   |||||||| ||||||| ||||||||||||||| || ||||| || | |||||| ||||| ||||||||||||||||    
T  13292210 ctgcagacacctttccttccaccacgaagactcatcgccgccgtgccggaaactgttaccgtcacatcggagcattctctgcc 13292292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 25 - 402
Target Start/End: Original strand, 16986878 - 16987261
Alignment:
Q  25 accaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcg 124  Q
    |||||||||||  |||||||||| ||||||| ||| |||| ||| ||| ||   | | ||||||||||| || || ||||| || | ||| |  |||| |    
T  16986878 accaaccacacaatgacacgtggtcaaacttgcaccgccttaaggctccgcgtctgaaggagcacgccaactcgcatgcaccgtgccacataggagtgtg 16986977  T
Q  125 ccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggt 224  Q
    || |||| |||||||| |||| ||||||||||||||| ||||||||||||  |||||||| ||||||||| ||||||||||| | ||||||||| |||||    
T  16986978 ccctcgcacaaggatcaccctgcacgtgtcctgctccatccctaatcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggt 16987077  T
Q  225 g------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtg 318  Q
    |      ||||||  |||||| |||||||||||||||||||| ||||||  |||||||||||| ||||||||||  ||||||  ||| || |  ||||||    
T  16987078 gaacttgcttcacctttaagggacacatcacttttcacaacacttcttacacactctttctcaattccattactggcttgagtgtcagagtgctaacgtg 16987177  T
Q  319 cctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 402  Q
    || || |||||||||||||||||||||||||||||| ||| || | ||  ||||||||| | ||||||||||||||||||||||    
T  16987178 cccgcatgcacctttcgttccaccgcgaagactcattgccgccgtaccagaagccgttagcgtcacaccggagcattctctgcc 16987261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 398
Target Start/End: Complemental strand, 34854328 - 34854169
Alignment:
Q  239 gtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttc 338  Q
    |||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||| ||| || |  |||||| ||||   |||| |||||||    
T  34854328 gtacacatcacttttcacaacatttcttacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtgtctgcaaacaccgttcgttc 34854229  T
Q  339 caccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctc 398  Q
    |||| |||| | ||||| |  |||| | |||||  |||||| ||||| ||||||||||||    
T  34854228 caccacgaacattcatcactgccatacggaaagttgttaccgtcacatcggagcattctc 34854169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 135 - 351
Target Start/End: Original strand, 9135257 - 9135479
Alignment:
Q  135 aggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------ctt 228  Q
    |||||| || |||| ||||||| ||||||||||||||||| ||  ||||||||||||||| ||||| |||| ||  | |||||| ||||||      |||    
T  9135257 aggatcaccttacatgtgtcctcctccgtccctaatcacacgctacataacccggagacggttatgaccaatacgtgtctatataagggtgaatttgctt 9135356  T
Q  229 cactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgca 328  Q
    ||| || ||||||    ||||||||||||||| || |||  |||||||||||| |||||||||| |||||||| | | || |  |||||||||   ||||    
T  9135357 caccctcaaggtatgattcacttttcacaacagtttttacacactctttctcaattccattactgacttgagcgttagagtgctaacgtgcctatatgca 9135456  T
Q  329 cctttcgttccaccgcgaagact 351  Q
    ||||||||||||||| |||||||    
T  9135457 cctttcgttccaccgtgaagact 9135479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 271 - 400
Target Start/End: Original strand, 9867977 - 9868106
Alignment:
Q  271 actctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaa 370  Q
    |||||| ||||||||||||||| |||||||| ||| || |  ||||| ||||| |||||||||||| ||||||||||||||| ||||| || | | | ||    
T  9867977 actcttcctcagttccattactgacttgagcgtcagagtgctaacgttcctgcatgcacctttcgtcccaccgcgaagactcgtcgccgccgttctggaa 9868076  T
Q  371 gccgttaccatcacaccggagcattctctg 400  Q
    ||||||||| ||||| || |||||| ||||    
T  9868077 gccgttaccgtcacatcgaagcattatctg 9868106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 246 - 355
Target Start/End: Complemental strand, 39879465 - 39879356
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    |||||||| |||||| || |||  ||||||||||||||| ||||||| |||||||| | |||| || |||||| ||||  ||||||||||||||||| ||    
T  39879465 tcactttttacaacactttttacacactctttctcagtttcattactgacttgagcgttaaagtgttaacgtgtctgcaggcacctttcgttccaccacg 39879366  T
Q  346 aagactcatc 355  Q
    |||| |||||    
T  39879365 aagattcatc 39879356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 386
Target Start/End: Complemental strand, 5863265 - 5863125
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    |||||||| |||||||||  ||  |||||||||||||||| |||||| |||||||| |   || |  ||||||| |||  |||  |||||||| |||| |    
T  5863265 tcactttttacaacattttctacacactctttctcagttcgattactgacttgagcgtttgagtgctaacgtgcttgcacgcaaatttcgttctaccgtg 5863166  T
Q  346 aagactcatcgccaccatgccgaaagccgttaccatcacac 386  Q
    |||||||||||| ||| | |||||| |||||||||||||||    
T  5863165 aagactcatcgctaccgtaccgaaaaccgttaccatcacac 5863125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 356
Target Start/End: Complemental strand, 12644839 - 12644753
Alignment:
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcg 356  Q
    |||| |||||||||||||||||| || ||||| ||  || |  ||| ||||||| ||||||||||||||||||| ||||||||||||    
T  12644839 cactttttctcagttccattactgacctgagcgtcggagtgctaacttgcctgcatgcacctttcgttccaccgtgaagactcatcg 12644753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 18774078 - 18773961
Alignment:
Q  227 ttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttg 326  Q
    ||||| || |||||||||| |||||||||| ||| |||||   |  ||| |||||||||||||||| | |||| | || ||| |  ||||||||||| ||    
T  18774078 ttcaccctcaaggtacacaacacttttcactacacttctttgactttctctctcagttccattactgatttgatcgtcgaagtgctaacgtgcctgcatg 18773979  T
Q  327 cacctttcgttccaccgc 344  Q
    ||||||||||||||||||    
T  18773978 cacctttcgttccaccgc 18773961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 366
Target Start/End: Original strand, 10287609 - 10287729
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||||||  |||| |||||||| ||||||||| |||||||| | || | |  |||||||||||  | |||||| ||||||||| |    
T  10287609 tcacttttcacaacacttcttacacactttttctcagatccattactgacttgagcgttaaggtgctaacgtgcctgcaggaacctttggttccaccgtg 10287708  T
Q  346 aagactcatcgccaccatgcc 366  Q
     ||| || |||||||| ||||    
T  10287709 tagattcgtcgccaccttgcc 10287729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 5929014 - 5929078
Alignment:
Q  236 aaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 300  Q
    |||| |||||||||||||||||||| ||||||  | |||| | |||||||||||||| |||||||    
T  5929014 aagggacacatcacttttcacaacacttcttacactctctctttcagttccattactgacttgag 5929078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 117; Significance: 2e-59; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 83 - 404
Target Start/End: Complemental strand, 379963 - 379636
Alignment:
Q  83 ggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcat 182  Q
    |||||| |||||||||||||||| || | |||||  || |||||||| |   |||||| |||||||||||||||||||||||| |||||||| |||||||    
T  379963 ggagcatgccagcttgcgtgcaccgtgccacacaggagcgcgccttcacaagaggatcaccctacacgtgtcctgctccgtccataatcacacgccgcat 379864  T
Q  183 aacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctt 276  Q
    ||  | |||| | ||||| ||||||  |||||||||  |||||      |||||| || ||||||||||||||||||||||||| ||||||  |||||||    
T  379863 aattcagagatggttatgaccaacatgcgcctatatacgggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctt 379764  T
Q  277 tctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgtt 376  Q
    |||||||||||||||| |||| ||  |||||| |  |||||||||   |||||||||||||||||||||||||||||||| | || | ||| |||| |||    
T  379763 tctcagttccattactgacttcagtgtcaaagtgctaacgtgcctagatgcacctttcgttccaccgcgaagactcatcgtcgccgtaccggaagctgtt 379664  T
Q  377 accatcacaccggagcattctctgccac 404  Q
    ||  ||||||||||||||||||||||||    
T  379663 acagtcacaccggagcattctctgccac 379636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 121002 - 121083
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatca 305  Q
    |||||||| || ||||||||||||||||||||||||| ||  ||  ||||||||||||||||||||||| |||| |||||||    
T  121002 tgcttcaccctcaaggtacacatcacttttcacaacactttatacacactctttctcagttccattactgacttaagcatca 121083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 83 - 397
Target Start/End: Original strand, 15741997 - 15742317
Alignment:
Q  83 ggagcacgccagcttgcgtgcactgttcaacacaaaagtgcg-ccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgca 181  Q
    |||||||||||| ||||||||||||| | |||||  || ||| || |||  |||||||| ||||||||||||| ||||| |||| |||||||| ||||||    
T  15741997 ggagcacgccagtttgcgtgcactgtgccacacaggagcgcgtccctcgtacaaggatcaccctacacgtgtcttgctc-gtccttaatcacacgccgca 15742095  T
Q  182 taacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactct 275  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||      ||||| ||| ||||||||||||||||||||||||| ||||||  |||| |    
T  15742096 taacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttcagtctcaaggtacacatcacttttcacaacacttcttacacacttt 15742195  T
Q  276 ttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgt 375  Q
    ||||||||||||||||| |||||||| | | || |  |||||||| ||  |||||||||| |||||| ||||||||||||| | || || |  || ||||    
T  15742196 ttctcagttccattactgacttgagcgtaagagtgctaacgtgccagcaggcacctttcgctccaccacgaagactcatcgtcgccgtgtcagaaaccgt 15742295  T
Q  376 taccatcacaccggagcattct 397  Q
    |||| |||||||||||||||||    
T  15742296 taccgtcacaccggagcattct 15742317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 301
Target Start/End: Original strand, 14601798 - 14602083
Alignment:
Q  22 aagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagt 121  Q
    |||||||| ||| || | |||||||||| ||||| |||  ||| | ||||| ||||| || ||||||||||||||||||||||| || |  |||| |||     
T  14601798 aagaccaatcactcgatcacacgtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagc 14601897  T
Q  122 gcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgag 221  Q
     | ||| | || | |||||||| |||||||||||| | |||  |||||||||| ||||||||||||||||||  |||||  ||||||||| |||||| ||    
T  14601898 acacctcctcgtagggatcgccttacacgtgtccttccccgctcctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataag 14601997  T
Q  222 g------gtgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    |       |||||||| || |||||||||| |||||||||||||| ||||||  |||||| | |||||| ||||||| ||||||||    
T  14601998 gatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttacacactctctttcagtttcattactgacttgagc 14602083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 134 - 410
Target Start/End: Original strand, 16012367 - 16012647
Alignment:
Q  134 aaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgct 227  Q
    ||||||| |||||||||||| |||||||||| ||||||||| |||||||||| |||| ||||||||  ||||| | ||||||||| ||||      ||||    
T  16012367 aaggatcaccctacacgtgttctgctccgtcactaatcacacgccgcataactcggatacgattattaccaacgcgcgcctatataagggtgaacttgct 16012466  T
Q  228 tcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgc 327  Q
    |||| || ||| |||| ||||||| ||||||   ||||||  |||||| |||||||||||||||| |||||||| ||  || || |||||||||||  |     
T  16012467 tcac-ctcaagatacatatcacttctcacaatgcttcttacacactctatctcagttccattactgacttgagcgtcggagtgttaacgtgcctgcaggt 16012565  T
Q  328 acctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    ||| ||||| || ||| ||||||  |||     | ||||  ||||||||||||||||||| | ||||||||||||||| ||||    
T  16012566 accattcgtccctccgtgaagacggatc-ttgtcgtgcccgaagccgttaccatcacaccagtgcattctctgccaccgttgc 16012647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 350
Target Start/End: Original strand, 15514392 - 15514678
Alignment:
Q  70 ctctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaa 169  Q
    ||||||||| || |||||||||||||||| |||||  || | |||||| || |||||| | | |||||||| |  ||||||| |||   | |  ||||||    
T  15514392 ctctgcactcaaaggagcacgccagcttgtgtgcatcgtgccacacaagagcgcgcctccacacaaggatcacgatacacgtatcccattactgccctaa 15514491  T
Q  170 tcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaacattt 263  Q
    ||| | ||||||||||| ||||| | ||||| |||   |  |||||||| ||||||      |||||| || ||||||||||||||||| ||||||| ||    
T  15514492 tcatatgccgcataacctggagatggttatgaccagggcgagcctatataagggtgaacttgcttcaccctcaaggtacacatcactttccacaacactt 15514591  T
Q  264 cttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagac 350  Q
    ||||  |||||||| |||||||||||||| |||||||| |   || |  ||||||||| |  ||||| |||||||||||||||||||    
T  15514592 cttacacactctttttcagttccattactgacttgagcgttggagtgctaacgtgcctacaggcacccttcgttccaccgcgaagac 15514678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 144 - 359
Target Start/End: Complemental strand, 5518726 - 5518505
Alignment:
Q  144 ctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaa 237  Q
    ||||||||||||| | | |  |||||||| | |||  |||||||||||||| ||||| ||||||| ||||||||| ||||||      |||||| || ||    
T  5518726 ctacacgtgtccttccctgctcctaatcatacgccttataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaa 5518627  T
Q  238 ggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgtt 337  Q
    ||||| ||||||||| ||||||| ||||||  || ||| ||||||||| |||||| |||||||| |  ||| |  |||||| ||||   |||||||||||    
T  5518626 ggtacgcatcactttccacaacacttcttacacattctctctcagttcaattactgacttgagcgttgaagtgctaacgtgtctgcactcacctttcgtt 5518527  T
Q  338 ccaccgcgaagactcatcgcca 359  Q
    |||  ||||||||| |||||||    
T  5518526 ccattgcgaagacttatcgcca 5518505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 224 - 356
Target Start/End: Complemental strand, 12683885 - 12683753
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 323  Q
    |||||||| |||||||||    ||||||||||||||| ||  ||  ||||||||||||||| |||||||||||||||| |   || |  |||||||||||    
T  12683885 tgcttcacccttaaggtatgattcacttttcacaacactttctacacactctttctcagtttcattactaacttgagcgttggagtgctaacgtgcctgc 12683786  T
Q  324 ttgcacctttcgttccaccgcgaagactcatcg 356  Q
      ||||||||||||||||||| |||||||||||    
T  12683785 aggcacctttcgttccaccgcaaagactcatcg 12683753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 359
Target Start/End: Complemental strand, 47253355 - 47253242
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| || |||  ||||||||||||||||||||||| |||||||| |   || |  ||| |||||||  |||||||| || ||||| ||    
T  47253355 tcacttttcacaacactttttacacactctttctcagttccattactgacttgagcgttggagtgctaacatgcctgcaagcaccttttgtcccaccccg 47253256  T
Q  346 aagactcatcgcca 359  Q
    ||||||| ||||||    
T  47253255 aagactcgtcgcca 47253242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 23350600 - 23350655
Alignment:
Q  161 cgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctat 216  Q
    |||||||||||||| ||| ||||||||||||||| ||||| ||||||| |||||||    
T  23350600 cgtccctaatcacacgccacataacccggagacggttatgaccaacacgcgcctat 23350655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 355
Target Start/End: Complemental strand, 3981961 - 3981919
Alignment:
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatc 355  Q
    ||||||| ||| ||||||||||||||||||| |||||||||||    
T  3981961 aacgtgcatgcatgcacctttcgttccaccgtgaagactcatc 3981919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 200
Target Start/End: Original strand, 1638214 - 1638279
Alignment:
Q  135 aggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatg 200  Q
    |||||| | ||||||||||||| | |||  |||||||| | ||||||||||||||||||| |||||    
T  1638214 aggatcacgctacacgtgtccttccccgctcctaatcatatgccgcataacccggagacggttatg 1638279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 13896482 - 13896538
Alignment:
Q  236 aaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattact 292  Q
    ||||||||||||||||| ||||||| ||||||| || ||| | |||||||| |||||    
T  13896482 aaggtacacatcactttccacaacacttcttatacaatctctttcagttcccttact 13896538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 44 - 402
Target Start/End: Complemental strand, 34064480 - 34064117
Alignment:
Q  44 gtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgcc 143  Q
    |||||| ||||| |||  ||| |||||||  ||||||||| ||||||||| ||||||| ||| || | |||||  || ||||||||||||||||||| ||    
T  34064480 gtggccgaacttacacctccttaagactccacacttaaggaagcacgccatcttgcgtacac-gtaccacacaggagcgcgccttcgcgcaaggatcacc 34064382  T
Q  144 ctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaa 237  Q
     |||| ||||||| || || ||||||||||  |||||||||||||| |||| ||||||||||| | ||||||||| ||||||      |||||| || ||    
T  34064381 atacatgtgtcctacttcgcccctaatcacgtgccgcataacccggtgacggttatggccaactcgcgcctatataagggtgaacttgcttcaccctcaa 34064282  T
Q  238 ggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgtt 337  Q
    ||||||||||||||||||||||| ||||||  |||||||||| |||| ||||||| |||||| | ||| || || |||||||||||   |||||||||||    
T  34064281 ggtacacatcacttttcacaacacttcttacacactctttcttagtttcattactgacttgaacgtcatagtgttaacgtgcctgcacacacctttcgtt 34064182  T
Q  338 ccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 402  Q
    | |||| ||||||||||  ||  ||| || |||| ||||||| |||||| | | |||||||||||    
T  34064181 ctaccgtgaagactcattaccgtcataccaaaagtcgttaccgtcacactgaaacattctctgcc 34064117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 52 - 396
Target Start/End: Complemental strand, 9403450 - 9403105
Alignment:
Q  52 actttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgt 151  Q
    |||| ||| ||||||||||||| ||||||||||| || ||||||||||||||||  | | ||||||||| |||||||| | |||||| | ||||||||||    
T  9403450 acttgcaccgcctcaagactctacacttaagggaacatgccagcttgcgtgcaccatgccacacaaaagcgcgccttcacacaaggaccaccctacacgt 9403351  T
Q  152 gtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacaca 245  Q
    |||||||| |||||||   |||| | |||||||||  ||| |  ||||||||||| | | ||||||| ||||      |||||||| || ||||||||||    
T  9403350 gtcctgcttcgtccctggccacatgtcgcataacctagaggcagttatggccaacgcgcacctatataagggtgaacttgcttcaccctcaaggtacaca 9403251  T
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||| ||||||| ||||||  ||||||||||||||||||||| | |||||||| ||  ||    |||||||||||     | |||| ||||||| ||    
T  9403250 tcactttccacaacacttcttacacactctttctcagttccattattgacttgagcgtcggagttctaacgtgcctgc-----cgtttcattccaccacg 9403156  T
Q  346 aagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattc 396  Q
    | ||||||||||  ||||| |  ||||||||||| ||||||||||||||||    
T  9403155 atgactcatcgctgccatgtcagaagccgttaccgtcacaccggagcattc 9403105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 90 - 399
Target Start/End: Original strand, 12449434 - 12449749
Alignment:
Q  90 gccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccgg 189  Q
    ||||||||||||| || |  | |||||| ||||| || ||||||||||||| ||||| ||||| ||| ||||| |||||||||||  | |||||||| ||    
T  12449434 gccagcttgcgtgtaccgggccacacaagagtgcaccctcgcgcaaggatcaccctagacgtggcctactccgcccctaatcacacactgcataacctgg 12449533  T
Q  190 agacgattatggccaacacacgcctatatgagggt------gcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagt 283  Q
    ||||  ||||| ||||| | ||||||||| |||||      | ||||| || ||||||||||||||||| ||||||| ||||||  |||||||| ||||     
T  12449534 agacagttatgaccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtacacatcactttccacaacacttcttacacactctttttcagc 12449633  T
Q  284 tccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatca 383  Q
    ||||||||| |||||||| ||| || |  ||||||||| |   |||||||||| ||||| |||||||||||| || |  ||||||||| ||||||  |||    
T  12449634 tccattactgacttgagcgtcagagtgctaacgtgcctacagacacctttcgtcccaccacgaagactcatcaccgcggtgccgaaagtcgttactgtca 12449733  T
Q  384 caccggagcattctct 399  Q
    |||| |||||||||||    
T  12449734 caccagagcattctct 12449749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 122 - 410
Target Start/End: Original strand, 31295418 - 31295712
Alignment:
Q  122 gcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgag 221  Q
    |||| ||| |||||||||| ||||||||||||| |||||||| |||||||||| |  |||||||||| ||||| ||||||||||| | ||||||| | ||    
T  31295418 gcgctttcacgcaaggatcaccctacacgtgtcttgctccgttcctaatcacacgaagcataacccgaagacggttatggccaacccccgcctatgtaag 31295517  T
Q  222 ggtg------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaac 315  Q
    ||||      |||||| ||  ||||||| |||||||||||||||| ||| ||  ||||||||||||||| ||||||| |||||||| || ||| |  |||    
T  31295518 ggtgaacttgcttcaccctcgaggtacatatcacttttcacaacacttcatacacactctttctcagtttcattactgacttgagcgtcgaagtgctaac 31295617  T
Q  316 gtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
     |||||||  ||| ||||||||||||| ||||||||| ||| | ||   ||| ||||  ||||  ||||||| ||||||||||||||||| ||||    
T  31295618 atgcctgcaggcaactttcgttccacctcgaagactcgtcgtcgccgcaccggaagctattactgtcacacccgagcattctctgccaccattgc 31295712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 19276861 - 19277135
Alignment:
Q  22 aagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagt 121  Q
    |||| ||||| |||||  |||||||||||||  | ||| |||| | |||||  |||| || |||||||||||||  ||||||||||| | |||||| |||    
T  19276861 aagatcaaccgcacgtcaacacgtggccaaagatacacagccttaggactccacactcaaaggagcacgccagcacgcgtgcactgtgccacacaagagt 19276960  T
Q  122 gcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgag 221  Q
    ||||||| || | |||||| ||  ||| || ||||||||||  |||||||| | ||||||||||| | ||||| ||||| ||||  | ||||||||| ||    
T  19276961 gcgcctt-gcacgaggatcaccacacatgtatcctgctccgctcctaatcatacgccgcataaccag-agacggttatgaccaaagcgcgcctatataag 19277058  T
Q  222 ggtg------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattact 292  Q
    ||||      |||||| || ||||||||||||||||||||||||| ||||||  |||||||||||| ||||||||||    
T  19277059 ggtgaacttgcttcaccctcaaggtacacatcacttttcacaacacttcttacacactctttctcatttccattact 19277135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 62 - 401
Target Start/End: Original strand, 19730415 - 19730758
Alignment:
Q  62 cctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctcc 161  Q
    |||| ||||||  |||||||||||||| |||| |||||||||||  |   ||| |  |||| ||||||||||||| ||| |||||||  | ||||||| |    
T  19730415 cctcgagactcctcacttaagggagcatgcca-cttgcgtgcaccatatcacataggagtgtgccttcgcgcaagtatcaccctacatatttcctgcttc 19730513  T
Q  162 gtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttca 255  Q
    | ||| ||||||| |  | |||||| ||| ||| |||| |||||  | | ||||||| ||||||      |||||| || ||||||||||||||||| ||    
T  19730514 gccccaaatcacatgttgtataacctggacacggttatagccaatgcgcacctatataagggtgaacttgcttcaccctcaaggtacacatcactttaca 19730613  T
Q  256 caacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatc 355  Q
    | ||| ||||||  ||||||||||||||||||||| | |||||||| |   || |  ||| ||||||| |||| ||||  ||||||| |||||||||| |    
T  19730614 cgacacttcttacacactctttctcagttccattattgacttgagcgttggagtgctaacatgcctgcatgca-ctttacttccaccacgaagactcaac 19730712  T
Q  356 gccaccatgccgaaagccgttaccatcacaccggagcattctctgc 401  Q
    |||  | ||||||||| |||||||  ||||||||||||||||||||    
T  19730713 gccgtcgtgccgaaagtcgttaccgccacaccggagcattctctgc 19730758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 165 - 300
Target Start/End: Original strand, 27860874 - 27861015
Alignment:
Q  165 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacacatcacttttcacaa 258  Q
    |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||  ||||      |||||||| || || ||||||||||||||||||||    
T  27860874 cctaatcacacgccgcataacccggagacggttatggccaacacgcgcctataaaagggtgaacttgcttcaccctcaaagtacacatcacttttcacaa 27860973  T
Q  259 catttcttatgcactctttctcagttccattactaacttgag 300  Q
    || ||||||  | |||| | |||||||||||||| |||||||    
T  27860974 cacttcttacactctctctttcagttccattactgacttgag 27861015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 358
Target Start/End: Original strand, 22497289 - 22497423
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 323  Q
    |||||||| || |||||||||| |||||||||||||| || |||| | |||| | || ||||||||||| |||||||| ||  || |  |||||| ||||    
T  22497289 tgcttcaccctcaaggtacacaacacttttcacaacactttttatactctctctttctgttccattactgacttgagcgtcggagtgctaacgtgtctgc 22497388  T
Q  324 ttgcacctttcgttccaccgcgaagactcatcgcc 358  Q
      ||||||||||||||| |||||||||||||||||    
T  22497389 aagcacctttcgttccatcgcgaagactcatcgcc 22497423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 19723348 - 19723490
Alignment:
Q  39 gacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaagga 138  Q
    ||||||||| |  |||| ||| |||||||||||| ||||||||| ||||||||||||   |||||||  | | |||||  || ||||||||  |||||||    
T  19723348 gacacgtggtcggacttacaccgcctcaagactccgcacttaagagagcacgccagcccacgtgcaccataccacacaggagcgcgccttcaagcaagga 19723447  T
Q  139 tcgccctacacgtgtcctgctccgtccctaatcacaagccgca 181  Q
    || |||||||| ||| || ||| ||||||||||||||||||||    
T  19723448 tcaccctacacttgtacttctctgtccctaatcacaagccgca 19723490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 341
Target Start/End: Original strand, 12424241 - 12424422
Alignment:
Q  166 ctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaac 259  Q
    ||||||||| ||||||||||||||||||| ||||| |     | ||||||||| ||||||      |||||| ||||||||||||| |||||||||||||    
T  12424241 ctaatcacatgccgcataacccggagacggttatgtcacgagcgcgcctatataagggtgaacttgcttcacccttaaggtacacaacacttttcacaac 12424340  T
Q  260 atttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccac 341  Q
    | || |||  |  ||| |||||||||||||||| ||||||   ||  || |  |||||||||||  ||||||||||||||||    
T  12424341 actttttagactttctctctcagttccattactgacttgattgtcgtagtgctaacgtgcctgcaggcacctttcgttccac 12424422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 361
Target Start/End: Complemental strand, 16343664 - 16343542
Alignment:
Q  239 gtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttc 338  Q
    |||||||||||||| ||||||| ||||||  |  ||| |||||||||||||||| |||||||  |   || |  |||||||||||  ||||| |||| ||    
T  16343664 gtacacatcactttccacaacacttcttacactttctctctcagttccattactgacttgagtgttggagtgctaacgtgcctgcaggcacccttcgctc 16343565  T
Q  339 caccgcgaagactcatcgccacc 361  Q
    ||| |||||||||||||||||||    
T  16343564 cactgcgaagactcatcgccacc 16343542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 361
Target Start/End: Complemental strand, 22692101 - 22692066
Alignment:
Q  326 gcacctttcgttccaccgcgaagactcatcgccacc 361  Q
    ||||||||||||||||||||||||||||||||||||    
T  22692101 gcacctttcgttccaccgcgaagactcatcgccacc 22692066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 18566852 - 18566769
Alignment:
Q  135 aggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatat 218  Q
    |||||| || ||||||||||||   ||||| ||||||||| |||||||||||  ||||||| |||| ||||| | |||||||||    
T  18566852 aggatcaccttacacgtgtcctctaccgtcgctaatcacacgccgcataacctagagacgagtatgaccaacccgcgcctatat 18566769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 20148393 - 20148289
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||  |||||||||||| |||||||||||||||||||     || |  |||||| |||| ||||| ||||||||||||||     
T  20148393 tcacttttcacaacactttcta--cactctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgca 20148296  T
Q  346 aagactc 352  Q
    |||||||    
T  20148295 aagactc 20148289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 352
Target Start/End: Original strand, 22184435 - 22184539
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||  |||||||||||| |||||||||||||||||||     || |  |||||| |||| ||||| ||||||||||||||     
T  22184435 tcacttttcacaacactttcta--cactctttctcaattccattactaacttgagcgatggagtgctaacgtgtctgcatgcacttttcgttccaccgca 22184532  T
Q  346 aagactc 352  Q
    |||||||    
T  22184533 aagactc 22184539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 23768293 - 23768214
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcat 303  Q
    ||||| || ||| |||||||||||||||| ||||||| ||||||  |||| | | ||||||| |||||| ||||||||||    
T  23768293 tgctttacccttgaggtacacatcactttccacaacacttcttacacactatctttcagttcaattactgacttgagcat 23768214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 18147618 - 18147576
Alignment:
Q  20 agaagaccaaccacacgttgacacgtggccaaactttcactgc 62  Q
    |||||||||| ||||||||||||||||||| ||||| ||||||    
T  18147618 agaagaccaatcacacgttgacacgtggcctaacttacactgc 18147576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 689870 - 689927
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcat 303  Q
    ||||||||||||||| ||  ||  ||| ||||||||||||||||||| ||||||||||    
T  689870 tcacttttcacaacactttatacacacactttctcagttccattactgacttgagcat 689927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 352
Target Start/End: Original strand, 9277338 - 9277419
Alignment:
Q  271 actctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactc 352  Q
    ||||||||||||||||| |||| |||||||| | | || |  |||||| ||||  | ||||||||||||||||| |||||||    
T  9277338 actctttctcagttccaatactgacttgagcgttatagtgctaacgtgtctgcaggaacctttcgttccaccgcaaagactc 9277419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 411
Target Start/End: Original strand, 19277175 - 19277260
Alignment:
Q  326 gcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 411  Q
    |||||||| |||||||||  ||||||||||||| || | ||| || |||||||| ||||| || ||||||||| ||| || |||||    
T  19277175 gcaccttttgttccaccggaaagactcatcgccgccgtaccggaaaccgttaccgtcacatcgaagcattctcagccgccgttgct 19277260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 14080561 - 14080466
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccacc 342  Q
    ||||||||||||||| ||  ||  ||||||||||||||| |||||||||||||||| ||| || |  || |||||||   ||||||||||| |||||    
T  14080561 tcacttttcacaacacttactacacactctttctcagtt-cattactaacttgagcgtcagagtgctaatgtgcctgtaggcacctttcgtcccacc 14080466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 300
Target Start/End: Complemental strand, 34187413 - 34187323
Alignment:
Q  211 gcctatatgagggtg--cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 300  Q
    |||||||| ||||||  |||||| || ||||||||  ||||||| ||| ||| || |||  ||||||||||||||||||||||| |||||||    
T  34187413 gcctatataagggtgagcttcaccctcaaggtacaattcacttt-caccacactttttacacactctttctcagttccattactgacttgag 34187323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 410
Target Start/End: Original strand, 15390480 - 15390762
Alignment:
Q  134 aaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------ct 227  Q
    ||||||| |||||||||||||||||||||||||||||||||   |||||||||||| |||| |||||||| || | ||||||||| ||||||      ||    
T  15390480 aaggatcaccctacacgtgtcctgctccgtccctaatcacacatcgcataacccggggacggttatggcctacgcgcgcctatataagggtgaacttgct 15390579  T
Q  228 tcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgc 327  Q
    |||| || ||||||||||||||||||||||||| ||||||  |||| ||| | |||||||| ||| |||||||| |||||| |  ||||||||     ||    
T  15390580 tcaccctcaaggtacacatcacttttcacaacacttcttacacactgtttattagttccatcacttacttgagcgtcaaagtgctaacgtgccaataggc 15390679  T
Q  328 acctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    | ||||||||||| ||||||||||||||||  || ||||| ||||||||||| ||||||  |||||||||||| |||| ||||    
T  15390680 agctttcgttccatcgcgaagactcatcgctgccgtgccggaagccgttaccgtcacactagagcattctctggcaccgttgc 15390762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 52 - 396
Target Start/End: Complemental strand, 18136149 - 18135799
Alignment:
Q  52 actttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgt 151  Q
    |||| ||| |||| ||||||| |||| ||| ||||||||| || |||||||||| || |  |||| |||  |||| ||||||||||||| ||||||| ||    
T  18136149 acttgcaccgccttaagactccgcacctaaaggagcacgctagattgcgtgcaccgtgctgcacagaagctcgccgtcgcgcaaggatcaccctacatgt 18136050  T
Q  152 gtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacaca 245  Q
    ||||||| ||||||||||||||| | ||||| ||  ||||||  |  ||||||||   ||||||||| ||||||      ||||||  |  ||||| |||    
T  18136049 gtcctgcaccgtccctaatcacacgtcgcattacgtggagacagtagtggccaacgtgcgcctatataagggtgaacttgcttcaccttctaggtataca 18135950  T
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    |||||||| |||||| ||||||  |||||||||||||||||||||||||||||||| ||| ||    ||||||||| |  ||||||||| | |||||| |    
T  18135949 tcacttttgacaacacttcttacacactctttctcagttccattactaacttgagcgtcagagtactaacgtgcctacaggcacctttcatcccaccgtg 18135850  T
Q  346 aagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattc 396  Q
    |||||||| |||| ||   |||||||  |||||||||||||||||| ||||    
T  18135849 aagactcaacgccgccgcaccgaaagtggttaccatcacaccggagaattc 18135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 52 - 357
Target Start/End: Original strand, 19050248 - 19050559
Alignment:
Q  52 actttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgt 151  Q
    |||| ||| |||| ||||||| |||||| |||||||| || | || ||||||||  | | |||||  || ||||||| |||||| |||| |||||||| |    
T  19050248 acttacaccgccttaagactccgcactttagggagcaagcgacctcgcgtgcaccataccacacaggagcgcgcctttgcgcaaagatcaccctacacat 19050347  T
Q  152 gtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacaca 245  Q
    |||||||||| | |||||||| | ||||||||||||||||    ||||||||||| || |||||||| ||||||      ||||||||| | ||||||||    
T  19050348 gtcctgctccatgcctaatcatacgccgcataacccggagttagttatggccaacgcaagcctatataagggtgaacttacttcactctcagggtacaca 19050447  T
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||||||  | |||||||| ||||| |||||| |||||||| ||| || |  |||| | ||||    ||||||||||||||||||    
T  19050448 tcacttttcacaacacttcttacactctctttcttagttctattactgacttgagcgtcagagtgctaacgggtctgcaaatacctttcgttccaccgcg 19050547  T
Q  346 aagactcatcgc 357  Q
    || |||||||||    
T  19050548 aacactcatcgc 19050559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 125 - 405
Target Start/End: Complemental strand, 15825359 - 15825074
Alignment:
Q  125 ccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggt 224  Q
    ||||||| |||||||| ||||||| ||||||| |||||||| ||| |||| |||||||||| || ||||| ||||| ||||| | ||||||||  |||||    
T  15825359 ccttcgcacaaggatcaccctacatgtgtcctactccgtccttaaacacacgccgcataactcgaagacggttatgaccaacgcgcgcctatacaagggt 15825260  T
Q  225 g------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtg 318  Q
    |      |||||| || ||||||||||| ||||||||||||| ||  ||  ||||||||||||||||||||||  |||||||| |||||| |  ||||||    
T  15825259 gaacttgcttcaccctcaaggtacacatgacttttcacaacactttctacacactctttctcagttccattaccgacttgagcgtcaaagtgctaacgtg 15825160  T
Q  319 cctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacc 405  Q
    |||||   ||| |||||||||||| | ||||||| |  || || |||||  |||| ||| | |||||||||| ||||||||||||||    
T  15825159 cctgcagacacatttcgttccaccacaaagactc-ttaccgccgtgccggtagccattatcgtcacaccggaacattctctgccacc 15825074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 135 - 402
Target Start/End: Original strand, 10923061 - 10923334
Alignment:
Q  135 aggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgctt 228  Q
    |||||| |||||||||||||||  |||||| ||||||||| ||||||||| ||| ||||  ||||| ||||||||||  ||||| ||||      |||||    
T  10923061 aggatcaccctacacgtgtcctcttccgtctctaatcacacgccgcataagccgaagactgttatgaccaacacacgtgtatataagggtgaacttgctt 10923160  T
Q  229 cactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgca 328  Q
    ||| || |||| |||| |||||||||||| || ||  ||  |||||||| | |||||||| ||| |||||||  ||  || |  ||||||||| | | ||    
T  10923161 caccctcaaggcacacttcacttttcacagcactttctacacactctttataagttccataactgacttgagtgtcggagtgataacgtgcctacataca 10923260  T
Q  329 cctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 402  Q
    ||||||||||||||||||||||| ||| ||||| | ||| |  || ||||| ||||||| ||||||||||||||    
T  10923261 cctttcgttccaccgcgaagactaatcaccaccgttccggagaccattaccgtcacaccagagcattctctgcc 10923334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 129 - 400
Target Start/End: Complemental strand, 29138103 - 29137825
Alignment:
Q  129 cgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatat-gaggg---- 223  Q
    ||||| |||||  |||||||||||| || ||||||||||||||||| || ||||||| |||||| | ||||| ||||| |  ||| |||| ||||         
T  29138103 cgcgcgaggattaccctacacgtgtactactccgtccctaatcacacgcagcataactcggagatggttatgaccaacgcgtgcccatatagaggtggac 29138004  T
Q  224 -tgcttcactcttaaggtacaca-tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcct 321  Q
     |||||||||||   ||||||   ||||||| ||||||||||||||  ||||||||||||||| ||||| | |||||||| ||   | |  ||||| |||    
T  29138003 ttgcttcactctcggggtacattctcactttccacaacatttcttacacactctttctcagttgcattaatgacttgagcgtcggtgtgctaacgtacct 29137904  T
Q  322 gcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctg 400  Q
    ||   || ||||||||||||| ||| ||||||||| | || ||||| |||||||||||||||||||  | |||||||||    
T  29137903 gcagacatctttcgttccacctcgatgactcatcgtcgccgtgccggaagccgttaccatcacaccaaaacattctctg 29137825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 131 - 358
Target Start/End: Complemental strand, 29711215 - 29710984
Alignment:
Q  131 cgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg----- 225  Q
    |||| ||||| | |||||||| |||| | |||  |||||||||| |||||||||| |||||||| ||| | ||||  | ||||||||| ||||||         
T  29711215 cgcagggatcacgctacacgtatccttccccgctcctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaactt 29711116  T
Q  226 -cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgct 324  Q
     |||||| || ||||||||||||||||||||||||| ||| ||  |||||| | ||| |||||||| | |||||||| |   || |  ||||||| |||     
T  29711115 gcttcaccctcaaggtacacatcacttttcacaacacttcgta--cactctctttcaattccattagtgacttgagcgttggagtgctaacgtgcatgca 29711018  T
Q  325 tgcacctttcgttccaccgcgaagactcatcgcc 358  Q
    | ||||||| |||||||||||||||| |||||||    
T  29711017 tacaccttttgttccaccgcgaagacgcatcgcc 29710984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 29743882 - 29744035
Alignment:
Q  19 cagaagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaa 118  Q
    ||||||||||||  |||||||||||||||   ||  | ||| | || ||| ||| ||||| ||  |||||||||||||||||||||| || | ||||       
T  29743882 cagaagaccaactgcacgttgacacgtggaataaaatacaccgtcttaaggctccgcactcaaaagagcacgccagcttgcgtgcaccgtgccacacggg 29743981  T
Q  119 agtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatca 172  Q
    || ||||  |||||| |||||| |||||||||||||||||||||||||||||||    
T  29743982 agcgcgctctcgcgctaggatcaccctacacgtgtcctgctccgtccctaatca 29744035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 144 - 340
Target Start/End: Original strand, 24157211 - 24157413
Alignment:
Q  144 ctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaa 237  Q
    |||||| |||||| | |||  ||||||||||  |||||||||||||||||  ||| ||||||||| ||| ||||| ||||||      |||||| || ||    
T  24157211 ctacacatgtccttccccgctcctaatcacataccgcataacccggagacagttagggccaacacgcgcttatataagggtgaacttgcttcaccctcaa 24157310  T
Q  238 ggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgtt 337  Q
    ||||||||  ||||||||||||| ||||||  |  | | |||||||||||||||| |||||||| ||| || |  ||||||| ||   ||||||||||||    
T  24157311 ggtacacaatacttttcacaacacttcttagactttatctctcagttccattactgacttgagcgtcagagtgctaacgtgcatgtaggcacctttcgtt 24157410  T
Q  338 cca 340  Q
    |||    
T  24157411 cca 24157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 359
Target Start/End: Complemental strand, 45715049 - 45714960
Alignment:
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcca 359  Q
    ||||||||||||||| ||||||| |||||||| |   || |  ||||||||||| ||||||||||||||||||  |||||||||||||||    
T  45715049 cactctttctcagtttcattactgacttgagcgttggagtgctaacgtgcctgcatgcacctttcgttccaccaggaagactcatcgcca 45714960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 410
Target Start/End: Complemental strand, 20120401 - 20120261
Alignment:
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaa 369  Q
    ||||||||||||||| ||||||| |||||||  ||  || |  |||||||||||   ||||||||||||||||| ||||| | | | ||| | |||||||    
T  20120401 cactctttctcagtttcattactgacttgagagtcggagtgctaacgtgcctgcagacacctttcgttccaccgtgaagatttaacaccagcgtgccgaa 20120302  T
Q  370 agccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    |||||||||| |||||| |||| ||| || |||||| ||||    
T  20120301 agccgttaccgtcacactggagtattatccgccaccgttgc 20120261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 30638732 - 30638654
Alignment:
Q  135 aggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcc 213  Q
    |||||| || |||||||||||| |||| |||||||||||| ||||||||||||| ||||  ||||| ||||||| ||||    
T  30638732 aggatcaccttacacgtgtcctcctccatccctaatcacatgccgcataacccgcagacagttatgaccaacacgcgcc 30638654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 273 - 363
Target Start/End: Original strand, 45258192 - 45258282
Alignment:
Q  273 tctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccat 363  Q
    ||||||| |||| ||||||| |||||||| |   || || |||||||||||   || ||||||||||||||||||||||||||||||||||    
T  45258192 tctttcttagtttcattacttacttgagctttggagtgttaacgtgcctgcagacatctttcgttccaccgcgaagactcatcgccaccat 45258282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 19290770 - 19290597
Alignment:
Q  26 ccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgc 125  Q
    |||||| || || |||| |||||| ||||| |||  ||||||| |||  || | || ||||||||| | ||||||||||| || | |||||  || ||||    
T  19290770 ccaaccgcatgtcgacaagtggcctaacttacaccacctcaaggctccacattcaaaggagcacgcaatcttgcgtgcaccgtgccacacaggagcgcgc 19290671  T
Q  126 cttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatg 200  Q
    || ||||||||||||| | ||||||||||||  ||||   ||||||| | || |||||||||||||||| |||||    
T  19290670 ctccgcgcaaggatcgtcatacacgtgtcct-ttccgcttctaatcatacgctgcataacccggagacggttatg 19290597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 301
Target Start/End: Complemental strand, 24499889 - 24499812
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    |||||||| |||||||||    ||||||||||||||||||  ||  |||||||||||| |||||||||| ||||||||    
T  24499889 tgcttcacccttaaggtatgattcacttttcacaacattttctacacactctttctcatttccattactgacttgagc 24499812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 20120530 - 20120455
Alignment:
Q  147 cacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagg 222  Q
    |||||||||  |||| ||| |||||||| |||||||||||  |||||||||||| ||||||| | ||||||| |||    
T  20120530 cacgtgtccgcctccatccttaatcacacgccgcataacctagagacgattatgaccaacacgcacctatataagg 20120455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 19919159 - 19919196
Alignment:
Q  326 gcacctttcgttccaccgcgaagactcatcgccaccat 363  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  19919159 gcacctttcgttccaccacgaagactgatcgccaccat 19919196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 80 - 356
Target Start/End: Original strand, 23728661 - 23728942
Alignment:
Q  80 aagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccg 179  Q
    |||||||||| ||||||||||||||  ||   |||||  ||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||| ||||    
T  23728661 aagggagcacaccagcttgcgtgcatcgtgtcacacaggagtgcgccttcacggaaggatcaccctacacgtgtcctgctctgtccctaatcacatgccg 23728760  T
Q  180 cataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcact 273  Q
    |||||   | ||||| |||||||||||   ||||||||| ||||      || ||||| || ||||||||||||||||||||||||| ||||||  ||||    
T  23728761 cataatttgaagacggttatggccaacgtgcgcctatataagggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacact 23728860  T
Q  274 ctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcg 356  Q
    |||||||| |||||||| | |||||||| ||| |  |  ||||||||||| | ||||||||||| ||||||||||||||||||    
T  23728861 ctttctcatttccattaatgacttgagcgtcataatgctaacgtgcctgcatccacctttcgtt-caccgcgaagactcatcg 23728942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 53 - 399
Target Start/End: Original strand, 16299397 - 16299739
Alignment:
Q  53 ctttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtg 152  Q
    ||||||| |||||||||||  | | |||||| || |||||| || | ||||||||| |||||||| || ||| || ||||  |||||| ||||||  |||    
T  16299397 ctttcaccgcctcaagacttcgtatttaaggaagtacgccatctcgtgtgcactgtacaacacaagagcgcgtctacgcgtgaggatcaccctacttgtg 16299496  T
Q  153 tcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg--cttcactcttaaggtacacatcact 250  Q
    |||||||||||| ||||| ||| |||||||||||||  ||||||||||||||||||||| |||||| ||||||  |||    ||| | |||||||||| |    
T  16299497 tcctgctccgtctctaattacacgccgcataacccg--gacgattatggccaacacacgtctatataagggtgaactt---gcttcatgtacacatcatt 16299591  T
Q  251 tttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagac 350  Q
    |||||||||| |||||| |||||||||||||||| ||||||| |||||| | ||  || |  || |||| |||   ||| |||||||||||||| |||||    
T  16299592 tttcacaacacttcttacgcactctttctcagtttcattacttacttgaacgtcggagtgctaatgtgcatgcagacacgtttcgttccaccgc-aagac 16299690  T
Q  351 tcatcgccaccatgccgaaagccgttaccatcacaccggagcattctct 399  Q
    |||||||| || |  || ||| ||||||  | |||||||||||||||||    
T  16299691 tcatcgccgccgtatcggaagtcgttacggtaacaccggagcattctct 16299739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 150 - 411
Target Start/End: Original strand, 4601398 - 4601665
Alignment:
Q  150 gtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtaca 243  Q
    ||||||| |||||  |||||||||| | |||||||||||||||||  |||| ||||  | ||| ||||| ||||||      |||||| || |||| |||    
T  4601398 gtgtcctactccgcacctaatcacacggcgcataacccggagacggctatgaccaatgcgcgcgtatataagggtgaacttgcttcaccctcaagggaca 4601497  T
Q  244 catcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccg 343  Q
    |||||  ||||||| || || |||  || | |||||||||| ||||||| |||||||| ||  || |  |||||||||||   |||||||||||||||||    
T  4601498 catcaaatttcacagcacttattacacattatttctcagtttcattactgacttgagcgtcggagtgctaacgtgcctgcagtcacctttcgttccaccg 4601597  T
Q  344 cgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 411  Q
    |||||||| |||||| |||||||| || |  ||||| ||||||| ||||||| ||||||||| |||||    
T  4601598 cgaagacttatcgccgccatgccggaaacaattaccgtcacaccagagcattttctgccaccgttgct 4601665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 401
Target Start/End: Complemental strand, 52565765 - 52565502
Alignment:
Q  143 cctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactctta 236  Q
    ||||||| | |||| ||||||||||||||||| || ||||||| |||||||||||||| |||||||  ||| |||| ||| ||      |||||| || |    
T  52565765 cctacacatatcctcctccgtccctaatcacatgctgcataactcggagacgattatgaccaacac--gccaatataaggatgaacttgcttcaccctca 52565668  T
Q  237 aggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgt 336  Q
    || ||    ||||||||||||||| ||  |  ||||||||| |||||||| ||||| |||||||| ||| || |  |||||| ||||  |||||||||||    
T  52565667 agttatgattcacttttcacaacactttctgcgcactctttttcagttcctttactgacttgagcgtcagagtgctaacgtgtctgcaggcacctttcgt 52565568  T
Q  337 tccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacac-cggagcattctctgc 401  Q
    |||| | |||| ||||||||||||||| ||| |||  |||||| |||||| |||||||||||||||    
T  52565567 tccatcacgaaaactcatcgccaccataccggaagttgttaccgtcacactcggagcattctctgc 52565502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 254 - 411
Target Start/End: Original strand, 14255051 - 14255208
Alignment:
Q  254 cacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactca 353  Q
    ||||||| ||||||  ||||||||||||||| ||||| | |||||||| |   || |  | ||||| |||  ||||| ||||||||||| ||||||||||    
T  14255051 cacaacacttcttacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaagactca 14255150  T
Q  354 tcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 411  Q
    ||||| ||  |||| ||||| ||||| |||||||||||||||||||||| || |||||    
T  14255151 tcgccgccgcgccggaagccattaccgtcacaccggagcattctctgccgccgttgct 14255208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 354
Target Start/End: Complemental strand, 25408350 - 25408066
Alignment:
Q  76 acttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaa 175  Q
    |||||||||||||||||||||||| ||||| || | ||| |  ||  ||||| | ||||||||||   |||||| |||||| | |||   |||||||||     
T  25408350 acttaagggagcacgccagcttgcctgcaccgtgccacagaggagcacgcctcctcgcaaggatcatgctacacatgtccttccccgcttctaatcacac 25408251  T
Q  176 gccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaacatttcttatg 269  Q
    |||  |||||||||||||  |||||  ||| ||||||||||   ||||||      |||||| || |||| |||||||||||||||||||| ||||||      
T  25408250 gccttataacccggagacagttatgaacaaaacacgcctatgaaagggtgaacttgcttcaccctcaagggacacatcacttttcacaacacttcttaca 25408151  T
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcat 354  Q
    |||||| | |||||| ||||||| ||||||||||   || |  |||||| ||||  ||||||||| |||||||||  ||||||||    
T  25408150 cactctctttcagtttcattactgacttgagcattggagtgctaacgtgtctgcaggcacctttcattccaccgcagagactcat 25408066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 361
Target Start/End: Complemental strand, 22414853 - 22414738
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||  |||| ||| |||||| ||||||| |||||||| ||| || |  |||||||||||  |||||||||||||||||||     
T  22414853 tcacttttcacaacactttctacacactttttttcagtttcattactgacttgagcgtcagagtgctaacgtgcctgcgggcacctttcgttccaccgca 22414754  T
Q  346 aagactcatcgccacc 361  Q
    ||||||||||| ||||    
T  22414753 aagactcatcgtcacc 22414738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 410
Target Start/End: Original strand, 21682516 - 21682767
Alignment:
Q  165 cctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaa 258  Q
    |||||||||| || ||||||||| ||||| ||||||  |||| ||||||||||| ||||||      | |||| || ||||||||||| |||||||||||    
T  21682516 cctaatcacacgcagcataacccagagactattatgatcaacgcacgcctatataagggtgaatttgcgtcaccctcaaggtacacattacttttcacaa 21682615  T
Q  259 catttcttatgcactct-ttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgc 357  Q
     ||||||||  |||||| |||| |||||||||||| |||||||| |   || |  ||||| |||    |||||||||||||||| ||  |||||||||||    
T  21682616 tatttcttacacactctcttct-agttccattactgacttgagcgttggagtgcaaacgtacctataggcacctttcgttccacagcagagactcatcgc 21682714  T
Q  358 caccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    | || | ||| |||| ||||||  | || |  |||||||||||||||| ||||    
T  21682715 cgccgtaccggaagctgttaccgacccatcaaagcattctctgccaccgttgc 21682767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 363
Target Start/End: Complemental strand, 48637596 - 48637511
Alignment:
Q  279 tcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc-gaagactcatcgccaccat 363  Q
    |||||||||||||| |||||||| ||| || |   ||||||||||  ||||||||||||| ||||| |||||||||||||||||||    
T  48637596 tcagttccattactgacttgagcgtcagagtgctgacgtgcctgcaggcacctttcgttctaccgcagaagactcatcgccaccat 48637511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 5671848 - 5671793
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||||||||||||    
T  5671848 tcacttttcacaacactttctacacactctttctcagttccattactaacttgagc 5671793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 361
Target Start/End: Complemental strand, 16030473 - 16030358
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||  |||||||  |||||||||||||| ||||||||||   |  |  |||||||||||   |||||||| |||||||| |    
T  16030473 tcacttttcacaacactttctacacactcttattcagttccattactgacttgagcatttgactgataacgtgcctgcagacacctttcattccaccgtg 16030374  T
Q  346 aagactcatcgccacc 361  Q
    ||||||||||||||||    
T  16030373 aagactcatcgccacc 16030358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 5459788 - 5459836
Alignment:
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 361  Q
    ||||| ||||| |||||||||||| ||||| ||||||||||||||||||    
T  5459788 aacgtacctgcatgcacctttcgtcccaccacgaagactcatcgccacc 5459836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 12177464 - 12177364
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||  ||  || |  ||||||| ||   ||||||||||||||||||||    
T  12177464 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagtgtcggagtgctaacgtgcatgtaggcacctttcgttccaccgcg 12177365  T
Q  346 a 346  Q
    |    
T  12177364 a 12177364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 192
Target Start/End: Original strand, 14254843 - 14254995
Alignment:
Q  40 acacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggat 139  Q
    |||||||||||||||| ||| |  | ||| || |||| ||||  ||| || ||||||||||||||| || | |||||  ||  |||  |||||| |||||    
T  14254843 acacgtggccaaacttacaccgttttaaggctttgcatttaaaagagtacaccagcttgcgtgcaccgtgccacacaggagcacgctatcgcgcgaggat 14254942  T
Q  140 cgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggaga 192  Q
    | |||||||| |||||  ||| ||||||||||| | ||||||||||| |||||    
T  14254943 caccctacacatgtccaactctgtccctaatcatacgccgcataacctggaga 14254995  T

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Target: scaffold0205 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 23197 - 22800
Alignment:
Q  19 cagaagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaa 118  Q
    ||||||||||||  ||||  |||||||||||| |||| ||| |||| |||||||  |||  || ||||||||||||||||| ||  | ||||  ||||      
T  23197 cagaagaccaactgcacgccgacacgtggccagacttgcaccgccttaagactccacacccaaaggagcacgccagcttgcatggtccgttctgcacatg 23098  T
Q  119 agtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatat 218  Q
    |||||||| |||| |||||||  |||||||| ||||||||||||||||||||||||  |||||||||| ||||| | ||||  ||||| | | |||| ||    
T  23097 agtgcgccctcgctcaaggattaccctacacatgtcctgctccgtccctaatcacacaccgcataacctggagagggttatcaccaacgcgcacctacat 22998  T
Q  219 gaggg------tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtc 312  Q
     ||||      |||||||| || ||||||||| ||||||||||||||| ||||||  |||  |||||||||||||||||| |||||||| ||| || |      
T  22997 aagggtgaacttgcttcaccctcaaggtacacgtcacttttcacaacacttcttacacacgatttctcagttccattactgacttgagcgtcagagtgct 22898  T
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    |||||||| ||  ||||||||||| |||| |||||||| |||||||    | |||||||   ||||| ||||| ||||||||||||| ||| ||||||    
T  22897 aacgtgcccgcaggcacctttcgtcccactgcgaagacccatcgccgttgtaccgaaagtttttaccgtcacatcggagcattctctaccatctttgc 22800  T

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Target: scaffold0205; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 410
Target Start/End: Original strand, 10909 - 11092
Alignment:
Q  227 ttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttg 326  Q
    ||||| || ||||||||||||||||||||||||| ||||||  |||||| | |||||||||||| | |||||||| |   || |  ||||||||||| |     
T  10909 ttcaccctcaaggtacacatcacttttcacaacacttcttacacactctctttcagttccattattgacttgagcgttggagtgctaacgtgcctgcata 11008  T
Q  327 cacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    ||||||| ||||||||||  ||| |||||||| || | ||| ||| |||||||  | || ||||||||||| ||||||| ||||    
T  11009 caccttttgttccaccgcagagattcatcgccgccgtaccggaagtcgttaccgactcatcggagcattctttgccaccgttgc 11092  T

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Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 399
Target Start/End: Complemental strand, 12516492 - 12516110
Alignment:
Q  24 gaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgc 123  Q
    |||||||| ||||| ||||| ||||| ||||| ||| |||| ||||||| || || ||| ||| |||| |||| || ||||| || |  |||| |||  |    
T  12516492 gaccaaccgcacgtcgacacatggccgaacttacaccgccttaagactccgctctcaagagagaacgctagctcgcatgcaccgtgcctcacagaagctc 12516393  T
Q  124 gcct-tcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagg 222  Q
    |||  ||| ||||||||| ||||||||||||||||||||||||||||||||| | |||||||  |||||||| ||||||||||  ||| ||||||| | |    
T  12516392 gcccctcgtgcaaggatcaccctacacgtgtcctgctccgtccctaatcacatgtcgcataaggcggagacggttatggccaaggcacacctatataaag 12516293  T
Q  223 gtg------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacg 316  Q
    |||      |||||| || |||||||| |||||||||||||||| || |||  || ||||||||||||||||||||||||||||| ||  || |  ||||    
T  12516292 gtgaacttgcttcaccctcaaggtacatatcacttttcacaacacttattacacaatctttctcagttccattactaacttgagcgtcggagtgctaacg 12516193  T
Q  317 tgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctct 399  Q
    || ||||  |||||||||||| ||||  ||||||| |||| |  | ||| | ||| |||| ||||||||||| ||||||||||    
T  12516192 tgtctgcaggcacctttcgtttcaccatgaagactgatcgtcgtcgtgctggaagtcgttgccatcacaccgaagcattctct 12516110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 128 - 365
Target Start/End: Original strand, 14859988 - 14860231
Alignment:
Q  128 tcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg-- 225  Q
    ||||||||||||| || |||||||||||||||| ||||||||||| | ||| ||||||| ||||||| ||||| |  |  | ||||||||| ||||||      
T  14859988 tcgcgcaaggatcaccatacacgtgtcctgctctgtccctaatcatacgcctcataacctggagacggttatgacttaagcgcgcctatataagggtgaa 14860087  T
Q  226 ----cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcct 321  Q
        |||||| || ||||||||||||||||||||||||| ||||||   ||| |||||||||||||||||| | ||||| |||| || |  || ||||||    
T  14860088 cttgcttcaccctcaaggtacacatcacttttcacaacacttcttacaaactgtttctcagttccattactgagttgagaatcagagtgctaatgtgcct 14860187  T
Q  322 gcttgcacctttcgttccaccgcgaagactcatcgccaccatgc 365  Q
    ||  ||||||||||||||||| |||||| |||||||||||||||    
T  14860188 gcaagcacctttcgttccaccacgaagattcatcgccaccatgc 14860231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 402
Target Start/End: Original strand, 12731341 - 12731730
Alignment:
Q  19 cagaagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaa 118  Q
    ||||| ||||||| |||| |||||||||||||||| | ||| || | ||  ||| ||  || | |||||||| |||||| | ||||| || | |||||      
T  12731341 cagaacaccaaccgcacgatgacacgtggccaaacatacaccgcattaaagctccgcttttgaaggagcacgtcagcttacatgcaccgtgccacacagg 12731440  T
Q  119 agtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatat 218  Q
    |||||||| |||||| || ||| || |||| ||||||| ||| ||||| ||||||| ||||||||||||| ||||  ||||| ||| | ||| | |||||    
T  12731441 agtgcgccctcgcgcgagaatcaccttacatgtgtcctactctgtcccaaatcacacgccgcataacccgaagacagttatgaccagcgcacacatatat 12731540  T
Q  219 gagggtg------cttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtc 312  Q
     ||||||      |||||| || ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||| | || ||||| ||  ||        
T  12731541 aagggtgaacttgcttcaccctcaaggttcacatcacttttcacaacacttcttatacactctttctcagttccattaatgacgtgagcgtcggagtact 12731640  T
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgcc 402  Q
    ||| ||  ||   ||||| ||||||||||| ||||||||| ||||| || ||||| ||||| ||||| |||||||| | |||||||||||    
T  12731641 aacatggttgtaggcaccattcgttccacctcgaagactcttcgccgccgtgccggaagcctttaccgtcacaccgaaacattctctgcc 12731730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 135 - 410
Target Start/End: Original strand, 431212 - 431493
Alignment:
Q  135 aggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------ctt 228  Q
    |||||| || |||||||||||| |||| |||||||||||| || |||||||||| ||||  |||||  |||||| ||||||||| ||||||      |||    
T  431212 aggatcaccttacacgtgtcctcctccatccctaatcacacgctgcataacccgcagacagttatgagcaacacgcgcctatataagggtggacatgctt 431311  T
Q  229 cactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgca 328  Q
    ||| || |||| |||  |||||||||||| || ||   | |||||||||||||||||||||| | |||||||| || ||| |  |||||| |||   |||    
T  431312 caccctcaagggacaattcacttttcacagcactttccacgcactctttctcagttccattattgacttgagcgtcgaagtgctaacgtgtctgtaggca 431411  T
Q  329 cctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    |||||| |||||||||||||||||| | ||| | | ||| ||||||||||| ||| ||||||||||| ||||| ||| ||||    
T  431412 cctttctttccaccgcgaagactcaacaccagcctaccggaagccgttaccgtcaaaccggagcattatctgcaaccgttgc 431493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 66 - 400
Target Start/End: Complemental strand, 25496202 - 25495863
Alignment:
Q  66 aagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtcc 165  Q
    |||||| ||||  ||||||||||| ||||||||| |||||    | |||||| || |||||  || || ||||||  || ||||||||||| | |||| |    
T  25496202 aagactttgcatctaagggagcacaccagcttgcatgcaccaccccacacaagagcgcgcccccgagcgaggatcatccaacacgtgtcctacaccgttc 25496103  T
Q  166 ctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacacatcacttttcacaac 259  Q
    ||||||||| ||||||||||||||||||| |||||  ||||   ||||||||| ||||      ||||||||  ||||||||||||||||||||  ||||    
T  25496102 ctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggtgaacttgcttcacctttaaggtacacatcacttttttcaac 25496003  T
Q  260 atttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcca 359  Q
      ||||||  |||||||||||||||  |||||| |||||||  ||| || |  |||||| ||||  ||||||| ||  |||||||||||| ||||| ||     
T  25496002 tcttcttacacactctttctcagtttgattactgacttgag-gtcagagtgctaacgtgtctgcaggcaccttacgccccaccgcgaagaatcatcaccg 25495904  T
Q  360 ccatgccgaaagccgttaccatcacaccggagcattctctg 400  Q
     | ||||| ||||||||||| |||||||||| |||||||||    
T  25495903 tcgtgccggaagccgttaccgtcacaccggaacattctctg 25495863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 12257138 - 12256952
Alignment:
Q  19 cagaagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaa 118  Q
    ||||||||||||| |||| ||||||||| ||| ||||  || |||  ||||||| ||||  || ||| ||||||| ||||| |||| |||   ||||||     
T  12257138 cagaagaccaaccgcacgatgacacgtgaccagacttgtaccgccgtaagactccgcacccaaaggaacacgccaacttgcatgcattgtatcacacaag 12257039  T
Q  119 agtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaa 205  Q
    || ||||| |||||||||| || | ||||||||||  || | |||||||||||||| |||||||||| || ||||| ||||||||||    
T  12257038 agcgcgccatcgcgcaagggtcacactacacgtgttatgtttcgtccctaatcacacgccgcataactcgaagacggttatggccaa 12256952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 17485522 - 17485604
Alignment:
Q  135 aggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctata 217  Q
    |||||||||||||||||||| |  | |||| ||||||||| || |||||||||||||||||||||| ||||| | ||||||||    
T  17485522 aggatcgccctacacgtgtcatctttcgtcactaatcacacgcagcataacccggagacgattatgaccaacgcgcgcctata 17485604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 356
Target Start/End: Complemental strand, 12108596 - 12108387
Alignment:
Q  153 tcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtaca-ca 245  Q
    |||| |||||||||||||||||||||||||||||||||| |  ||||| ||||| |  |||||||| ||||      |||||||| || ||||||||       
T  12108596 tcctcctccgtccctaatcacaagccgcataacccggaggccgttatgaccaacgcgtgcctatataagggtgaacttgcttcaccctcaaggtacattc 12108497  T
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||| ||| || |||| || ||   || ||||||||||||||||||||||||||||| ||  || |  ||| ||| ||| |||||||||| ||||||| ||    
T  12108496 tcattttccagaaca-ttatttcacattctttctcagttccattactaacttgagcgtcggagtggtaacatgcatgcatgcacctttcattccaccacg 12108398  T
Q  346 aagactcatcg 356  Q
    | |||||||||    
T  12108397 aggactcatcg 12108387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 361
Target Start/End: Original strand, 28723787 - 28723902
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||||||  ||  |||||||||| |||||||||| | |||||||| |   |  | ||||||||||  | |||| |||||||||||||||    
T  28723787 tcacttttcacaacattttctacacactctttcttagttccattagtgacttgagcgttggattgccaacgtgcctattagcacatttcgttccaccgcg 28723886  T
Q  346 aagactcatcgccacc 361  Q
    ||||||||| ||||||    
T  28723887 aagactcattgccacc 28723902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 206
Target Start/End: Original strand, 7835464 - 7835541
Alignment:
Q  129 cgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaac 206  Q
    ||||| ||||||||||| |||||||||| |||||| ||| |||||| | |||||||||| |||||| |||||| ||||    
T  7835464 cgcgcgaggatcgccctgcacgtgtcctcctccgttcctgatcacacgtcgcataacccagagacggttatggacaac 7835541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 358
Target Start/End: Complemental strand, 12252071 - 12251954
Alignment:
Q  241 acacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttcca 340  Q
    |||||||||||||||||||| ||||||  |||||||||||| || | ||||| |||||||  ||| || |  ||| ||||||| ||||||||| || | |    
T  12252071 acacatcacttttcacaacaattcttacacactctttctcattttcgttactgacttgagtgtcagagtgctaacatgcctgcatgcaccttttgtccta 12251972  T
Q  341 ccgcgaagactcatcgcc 358  Q
      ||||||||||||||||    
T  12251971 ttgcgaagactcatcgcc 12251954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 21649424 - 21649376
Alignment:
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 361  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  21649424 aacgtgcttgcaggcacctttcgttccaccgcgaagactcatcgccacc 21649376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 351
Target Start/End: Original strand, 21342300 - 21342405
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||| |||||||| |||||||||||||| |||||||| |   |  || ||||||||||| |  ||||||||| |||||| |    
T  21342300 tcacttttcacaacactttctatacactctttatcagttccattactgacttgagcgttgtactgttaacgtgcctgcatatacctttcgtcccaccgtg 21342399  T
Q  346 aagact 351  Q
    ||||||    
T  21342400 aagact 21342405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 1770904 - 1770848
Alignment:
Q  245 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    |||||||||||||||| ||  ||  ||||||| ||||||||||||||||||||||||    
T  1770904 atcacttttcacaacactttctacacactcttcctcagttccattactaacttgagc 1770848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 21652641 - 21652557
Alignment:
Q  326 gcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    |||| |||||||||||| ||||||||||||||||||   ||| |||||||||||    ||| |||||||||||| ||||| ||||    
T  21652641 gcacgtttcgttccaccacgaagactcatcgccaccgcaccggaagccgttaccgattcactggagcattctctaccaccgttgc 21652557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 9781514 - 9781565
Alignment:
Q  241 acacatcacttttcacaacatttcttatgcactctttctcagttccattact 292  Q
    |||||||||||||||||||| ||||||  |||||||| |||||| |||||||    
T  9781514 acacatcacttttcacaacacttcttacacactctttttcagttacattact 9781565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 17143762 - 17143817
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| ||||||||    
T  17143762 tcacttttcacaacactttctacacactctttctcagttccattactgacttgagc 17143817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 122 - 393
Target Start/End: Original strand, 6743 - 7020
Alignment:
Q  122 gcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgag 221  Q
    ||||||| | |||||||| | |||||| |||||||| ||| |||||||||||| ||||||||||| ||||||| |||||||||||   ||||||||  ||    
T  6743 gcgcctttgtgcaaggattgacctacatgtgtcctgatccatccctaatcacacgccgcataacctggagacggttatggccaacgtgcgcctatacaag 6842  T
Q  222 ggtgc------ttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaac 315  Q
    ||||       ||||| || ||||||||||||||||||||||||| ||||||  ||||| ||||||||| || |||| |||||||| ||| ||    |||    
T  6843 ggtgaacttgtttcaccctcaaggtacacatcacttttcacaacacttcttacacactcgttctcagtttcaatactgacttgagcgtcagagacctaac 6942  T
Q  316 gtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagca 393  Q
    |||||| |  ||| ||||||||||||| ||||||||||||| | || ||||| ||||||||||| ||||||| |||||    
T  6943 gtgcctaccagcatctttcgttccaccacgaagactcatcggcgccgtgccggaagccgttaccgtcacaccagagca 7020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 22 - 301
Target Start/End: Complemental strand, 215580 - 215295
Alignment:
Q  22 aagaccaaccacacgttgacacgtggccaaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagt 121  Q
    |||||||| ||| || | |||||||||| ||||| |||  ||| | ||||| ||||| || ||||||||||||||||||||||| || |  |||| |||     
T  215580 aagaccaatcactcgatcacacgtggcctaacttacacctccttacgactccgcactcaaaggagcacgccagcttgcgtgcaccgtgcctcacagaagc 215481  T
Q  122 gcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgag 221  Q
     | ||| | || | |||||||| |||||||||||| | |||  |||||||||| ||||||||||||||||||  |||||  ||||||||| |||||| ||    
T  215480 acacctcctcgtagggatcgccttacacgtgtccttccccgctcctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataag 215381  T
Q  222 g------gtgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    |       |||||||| || |||||||||| |||||||||||||| ||||||  |||||| | |||||| ||||||| ||||||||    
T  215380 gatgaacttgcttcaccctcaaggtacacaacacttttcacaacacttcttacacactctctttcagtttcattactgacttgagc 215295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 151 - 358
Target Start/End: Original strand, 24576495 - 24576708
Alignment:
Q  151 tgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacac 244  Q
    |||||| |||||  |||||||||| | ||||||||| |||| || |||||  |||| |  |||||||| ||||||      |||||| || |||||||||    
T  24576495 tgtccttctccgctcctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtacac 24576594  T
Q  245 atcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgc 344  Q
    || ||||||||||||| ||||||  ||||| || | |||||||||||| |||||||| ||| || || |||||||||||  |||||||||||||||| ||    
T  24576595 attacttttcacaacacttcttacacactcatttttagttccattactgacttgagcgtcagagtgttaacgtgcctgcaggcacctttcgttccactgc 24576694  T
Q  345 gaagactcatcgcc 358  Q
      || |||||||||    
T  24576695 agagtctcatcgcc 24576708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 405
Target Start/End: Complemental strand, 21416901 - 21416657
Alignment:
Q  167 taatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacacatcacttttcacaaca 260  Q
    |||||||| ||||||||||||||||||| ||||| ||||| | | ||||||  ||||||      |||||| ||||||||||   ||| |||||||||||    
T  21416901 taatcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaaca 21416802  T
Q  261 tttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccac 360  Q
     ||  ||  ||||||||||||||| ||||||| |||||||| ||  || |  |||| || |||   ||||||  | |||| |||||| ||||| |||| |    
T  21416801 ctttctacacactctttctcagtttcattactgacttgagcgtcggagtgctaacgagcatgcagacaccttcagatccatcgcgaatactcaacgccgc 21416702  T
Q  361 catgccgaaagccgttaccatcacaccggagcattctctgccacc 405  Q
    | | | ||||||| ||||| ||||||||||||||| |||||||||    
T  21416701 cgtactgaaagccattaccgtcacaccggagcattatctgccacc 21416657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 136 - 289
Target Start/End: Original strand, 11776140 - 11776299
Alignment:
Q  136 ggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtgc------ttc 229  Q
    ||||| ||||||| ||||| |||||| ||| |||||||| ||||||| | ||||||||| ||||| ||||| | | ||||||| | ||||       |||    
T  11776140 ggatcaccctacatgtgtcatgctccatccttaatcacacgccgcattatccggagacggttatgcccaacgcgcacctatataaaggtgaacttgtttc 11776239  T
Q  230 actcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccatt 289  Q
    || || |||||||| |||||||||| ||||| | ||||  ||||||||||||||||||||    
T  11776240 accctcaaggtacatatcacttttcccaacactccttaaacactctttctcagttccatt 11776299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 271 - 358
Target Start/End: Original strand, 17319657 - 17319747
Alignment:
Q  271 actctttctcagttccattactaacttgagcatcaaagggtc---aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcc 358  Q
    |||||||||||||||||||||| |||||| ||||| || |     ||| ||||||| |||||||||||||||||| |||||||||||||||    
T  17319657 actctttctcagttccattactgacttgaacatcagagtgctgctaacatgcctgcatgcacctttcgttccaccacgaagactcatcgcc 17319747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 411
Target Start/End: Original strand, 3459390 - 3459661
Alignment:
Q  144 ctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaa 237  Q
    ||||| ||||||| || ||||| |||||||| |||||||||||| |||||| ||| | ||||| | ||||||||| ||||||      |||||| || ||    
T  3459390 ctacatgtgtcctccttcgtccttaatcacacgccgcataacccagagacggttacgaccaac-cgcgcctatataagggtgaacttgcttcac-ctcaa 3459487  T
Q  238 ggtacacatcacttttcac-aacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgt 336  Q
    |||||   | ||||||||| |||| ||  ||  ||||||| ||||||||||||||| ||||||||  |  || |  |||||||||||  ||||||||||     
T  3459488 ggtacgatttacttttcaccaacactttctacacactcttgctcagttccattactgacttgagcgccggagtgctaacgtgcctgcaggcacctttcgc 3459587  T
Q  337 tccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 411  Q
     |||||||||||||||||  || ||||   |||| | |||||||||||||  |||||||||||||| || |||||    
T  3459588 -ccaccgcgaagactcattaccgccatattgaaaactgttaccatcacactagagcattctctgccgccgttgct 3459661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 246 - 352
Target Start/End: Complemental strand, 18323021 - 18322915
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||||||  ||  || ||||||||||||| |||||| |||||||| |   || || ||| || |||| ||||||||| |||||||||||    
T  18323021 tcacttttcacaacattttctacacaatctttctcagttctattactgacttgagcgttggagtgttaacatgtctgcatgcaccttttgttccaccgcg 18322922  T
Q  346 aagactc 352  Q
    |||||||    
T  18322921 aagactc 18322915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 24071138 - 24070950
Alignment:
Q  19 cagaagaccaaccacacgttgacacgtggcc-aaactttcactgcctcaagactctgcacttaagggagcacgccagcttgcgtgcactgttcaacacaa 117  Q
    ||||||||||| ||||||||||||||||||| |||||  ||  |||| ||| ||| || |   | ||||||||||||||||  |||||| | | |||||     
T  24071138 cagaagaccaatcacacgttgacacgtggcctaaactaacagcgccttaaggctc-gcgccggaaggagcacgccagcttggatgcactatgccacacag 24071040  T
Q  118 aagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcataacccggagacgattatggccaaca 207  Q
    ||  ||| |  ||| |||| ||| || ||| |||||||| ||||||||||||||||| ||||||||||||  ||||| ||||| ||||||    
T  24071039 aatcgcgtccccgcacaagaatcaccgtacgcgtgtccttctccgtccctaatcacacgccgcataacccatagacggttatgaccaaca 24070950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 299
Target Start/End: Original strand, 4565384 - 4565459
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttga 299  Q
    |||||||| || |||||||||| |||||||||||||| ||||||| |  ||| | |||||| ||||||||||||||    
T  4565384 tgcttcaccctcaaggtacacaacacttttcacaacacttcttatactttctctttcagtttcattactaacttga 4565459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 410
Target Start/End: Complemental strand, 20055590 - 20055493
Alignment:
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgc 410  Q
    |||||||||||   |||| |||||||||||||||||| |||||||| || | ||| ||||||||||     || ||||||||||||||||||| ||||    
T  20055590 aacgtgcctgcagacacccttcgttccaccgcgaagattcatcgccgccgtaccggaagccgttactgattcatcggagcattctctgccaccgttgc 20055493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 15058046 - 15057998
Alignment:
Q  313 aacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccacc 361  Q
    ||||||||||| |||||||||||||||||| | ||||||||||| ||||    
T  15058046 aacgtgcctgcatgcacctttcgttccaccacaaagactcatcgtcacc 15057998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 6928103 - 6928157
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 300  Q
    ||||||||||||||| ||  ||  ||||||||||||||||||||||| |||||||    
T  6928103 tcacttttcacaacactttctacacactctttctcagttccattactgacttgag 6928157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 361
Target Start/End: Complemental strand, 23269243 - 23269209
Alignment:
Q  327 cacctttcgttccaccgcgaagactcatcgccacc 361  Q
    |||||||||||||||||| ||||||||||||||||    
T  23269243 cacctttcgttccaccgcaaagactcatcgccacc 23269209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 13765043 - 13764950
Alignment:
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccat 363  Q
    ||||||||||||||| ||||||| |||||| |||   ||  | |||||||||||   ||||||||||  |||||||||||||| || |||||||    
T  13765043 cactctttctcagtttcattactcacttgaacattggagtcttaacgtgcctgcagacacctttcgtcacaccgcgaagactcttcaccaccat 13764950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 23243884 - 23243819
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccatt 289  Q
    |||||||| || ||| ||||||||||||||||||||| ||||||  |||| | | |||||||||||    
T  23243884 tgcttcaccctcaagatacacatcacttttcacaacacttcttacacactatctttcagttccatt 23243819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 290
Target Start/End: Complemental strand, 11759 - 11550
Alignment:
Q  83 ggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcacaagccgcat 182  Q
    |||||||| |||||| | |||||||| | ||||| |||| |||| |||||| || ||| || |||| ||||||| ||||||||| ||||||| |||||||    
T  11759 ggagcacgtcagcttacatgcactgtgccacacagaagtacgccctcgcgcgagaatcaccttacatgtgtcctactccgtcccaaatcacacgccgcat 11660  T
Q  183 aacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctt 276  Q
    |||||| ||||  ||||| ||| | ||| | ||||| ||||      || ||||| || ||||| |||||||||||||||||||   ||||| |||||||    
T  11659 aacccgaagacagttatgaccagcgcacacatatataagggtgaacttggttcaccctcaaggt-cacatcacttttcacaaca---cttatacactctt 11564  T
Q  277 tctcagttccatta 290  Q
    ||||||||||||||    
T  11563 tctcagttccatta 11550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 75 - 355
Target Start/End: Complemental strand, 41051 - 40765
Alignment:
Q  75 cacttaagggagcacgccagcttgcgtgcactgttcaacacaaaagtgcgccttcgcgcaaggatcgccctacacgtgtcctgctccgtccctaatcaca 174  Q
    |||| |||||||||||||| ||| | ||||| || |  ||||| ||  ||||| | |||| ||||| | |||||| |||| | | |||| | ||||||||    
T  41051 cactcaagggagcacgccaactttcctgcaccgtgccgcacaagagcacgcctcctcgcagggatcacgctacacatgtcgttccccgttcttaatcaca 40952  T
Q  175 agccgcataacccggagacgattatggccaacacacgcctatatgaggg------tgcttcactcttaaggtacacatcacttttcacaacatttcttat 268  Q
     ||||||||||||||||||| ||||| ||| | ||||||||||  ||||      |||||||| || |||||||||||||||||||| |||| ||| ||     
T  40951 tgccgcataacccggagacggttatgaccagcgcacgcctataaaagggtgaacttgcttcaccctcaaggtacacatcacttttcataacacttcctac 40852  T
Q  269 gcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatc 355  Q
     | |||| | |||||||||| ||| |||||||| |   || |  ||||||||||| ||| |||||||||| ||| |  |||||||||    
T  40851 actctctctttcagttccatcactgacttgagcgttggagtgctaacgtgcctgcatgcgcctttcgttctaccacagagactcatc 40765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 270 - 392
Target Start/End: Complemental strand, 35307 - 35185
Alignment:
Q  270 cactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaa 369  Q
    ||||||||||||||||| ||||| |||||||  ||| || |  |||||||||||  |||| ||||||| |||  |||||||||| |||| || | ||| |    
T  35307 cactctttctcagttccgttactgacttgagtgtcagagtgctaacgtgcctgcaagcacatttcgttgcactacgaagactcaacgccgccgtaccgga 35208  T
Q  370 agccgttaccatcacaccggagc 392  Q
    |||||||||||||||||||||||    
T  35207 agccgttaccatcacaccggagc 35185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 411
Target Start/End: Complemental strand, 5038 - 4953
Alignment:
Q  326 gcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcattctctgccacctttgct 411  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| ||||| ||||  |||||||||| ||||||||||| || |||||    
T  5038 gcacctttcgttccacctcgaagactcttcgccaccgtgccggaagcctttactgtcacaccggaacattctctgccgccgttgct 4953  T

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Target: scaffold0294 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 162 - 301
Target Start/End: Original strand, 165 - 311
Alignment:
Q  162 gtccctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg------cttcactcttaaggtacaca-tcacttttc 254  Q
    |||||||||||||  | |||||||||||||||  ||||| ||||| | |||||| || ||||||      |||||| || ||||||||   |||||||||    
T  165 gtccctaatcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtacattctcacttttc 264  T
Q  255 acaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    |||||| ||||||  ||||||||||||||||||||||| ||||||||    
T  265 acaacacttcttacacactctttctcagttccattactgacttgagc 311  T

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Target: scaffold0023 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 347
Target Start/End: Original strand, 95823 - 95924
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  || ||||||||||||||||||||||||||||||||| |  ||| |  |||||||||||  | |||||| || ||||||||    
T  95823 tcacttttcacaacactttctacgcactctttctcagttccattactaacttgagcgttgaagtggtaacgtgcctgcaggaaccttttgtcccaccgcg 95922  T
Q  346 aa 347  Q
    ||    
T  95923 aa 95924  T

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Target: scaffold0505 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 361
Target Start/End: Complemental strand, 7963 - 7848
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcg 345  Q
    ||||||||||||||| ||  ||  |||||||||||| || ||||||| | |||||| | | || |  ||||||||| | |||||||||| |||||||| |    
T  7963 tcacttttcacaacactttctacacactctttctcaattgcattactgatttgagcgttagagtgctaacgtgcctacatgcacctttccttccaccgtg 7864  T
Q  346 aagactcatcgccacc 361  Q
    ||||||||||||||||    
T  7863 aagactcatcgccacc 7848  T

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Target: scaffold0140 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 395
Target Start/End: Complemental strand, 6398 - 6227
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgc 323  Q
    |||||||| || |||||||   ||||||||||||||| ||  ||  |||| |||||||||||||||||| |||||||| || ||| |  |||||||||||    
T  6398 tgcttcacgctcaaggtacgactcacttttcacaacactttctacacactatttctcagttccattactgacttgagcttcgaagtgctaacgtgcctgc 6299  T
Q  324 ttgcacctttcgttccaccgcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagcatt 395  Q
       ||||||| ||||||| ||  ||||||| ||   || | ||||||| ||||||| ||||||| |||||||    
T  6298 aaacaccttttgttccactgcagagactcaacgttgccgtaccgaaagtcgttaccgtcacaccagagcatt 6227  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 236 - 354
Target Start/End: Original strand, 20500 - 20618
Alignment:
Q  236 aaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcg 335  Q
    |||||||||||||||||||| |||||||  ||  ||||||||||||||||| ||| | |||||||| ||| || |  ||| ||  ||   ||||||||||    
T  20500 aaggtacacatcacttttcataacattttctacacactctttctcagttcctttagtgacttgagcgtcagagtgctaacatgtttgtaagcacctttcg 20599  T
Q  336 ttccaccgcgaagactcat 354  Q
    ||||||||||||| |||||    
T  20600 ttccaccgcgaagcctcat 20618  T

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Target: scaffold0057 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 394
Target Start/End: Original strand, 73817 - 73963
Alignment:
Q  248 acttttcacaacatttcttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaa 347  Q
    ||||||||||||| ||  || ||||||||| |||  ||||||||||| |||||| ||| || |  ||| ||||||  ||||||||| |||||||||| ||    
T  73817 acttttcacaacactttctacgcactctttttcaaatccattactaatttgagcgtcagagtgctaacatgcctgaatgcaccttttgttccaccgcaaa 73916  T
Q  348 gactcatcgccaccatgccgaaagccgttaccatcacaccggagcat 394  Q
    | |||| |  | || ||||  |||| |||||||||||||||||||||    
T  73917 ggctcaacatcgccgtgccagaagctgttaccatcacaccggagcat 73963  T

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Target: scaffold0259 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 393
Target Start/End: Complemental strand, 24450 - 24400
Alignment:
Q  343 gcgaagactcatcgccaccatgccgaaagccgttaccatcacaccggagca 393  Q
    |||||||||||||||| |||| ||| ||||||||||| |||||||||||||    
T  24450 gcgaagactcatcgccgccataccggaagccgttaccgtcacaccggagca 24400  T

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Target: scaffold0092 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 21609 - 21685
Alignment:
Q  224 tgcttcactcttaaggtacacatcacttttcacaacatttcttatgcactctttctcagttccattactaacttgag 300  Q
    |||||||| || ||||||||||||||||| ||||||| ||||||  |||||| | |||||| || |||| |||||||    
T  21609 tgcttcaccctcaaggtacacatcactttccacaacacttcttaaacactctctttcagtttcaatactgacttgag 21685  T

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Target: scaffold0054 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 68815 - 68868
Alignment:
Q  246 tcacttttcacaacatttcttatgcactctttctcagttccattactaacttgagc 301  Q
    ||||||||||||||| ||  |||  |||||||||||||||||||||||||||||||    
T  68815 tcacttttcacaacactttctat--actctttctcagttccattactaacttgagc 68868  T

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Target: scaffold0291 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 166 - 358
Target Start/End: Original strand, 8508 - 8701
Alignment:
Q  166 ctaatcacaagccgcataacccggagacgattatggccaacacacgcctatatgagggtg--cttcactcttaaggtacacatcacttttcacaacattt 263  Q
    ||||||| | || |||||||||||||||| |||||  |||| | ||||||||| ||||||   ||||| |||||||||    ||||||||||||||| ||    
T  8508 ctaatcaaacgctgcataacccggagacggttatgctcaacgcgcgcctatataagggtgaagttcacccttaaggtatgattcacttttcacaacactt 8607  T
Q  264 cttatgcactctttctcagttccattactaacttgagcatcaaagggtcaacgtgcctgcttgcacctttcgttccaccgcgaagactcatcgcc 358  Q
      ||  |||| ||| |||||| ||||||| |||||||| || ||| |  |||||| ||||   |||||||  ||||||||| |||||||| ||||    
T  8608 tctacacactgtttttcagtttcattactgacttgagcgtcgaagtgctaacgtg-ctgcaaacaccttttattccaccgcaaagactcaacgcc 8701  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 355
Target Start/End: Original strand, 29368 - 29398
Alignment:
Q  325 tgcacctttcgttccaccgcgaagactcatc 355  Q
    |||||||||||||||||||||||||||||||    
T  29368 tgcacctttcgttccaccgcgaagactcatc 29398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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