View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17772_high_4 (Length: 325)

Name: NF17772_high_4
Description: NF17772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17772_high_4
NF17772_high_4
[»] chr1 (5 HSPs)
chr1 (265-314)||(4014680-4014729)
chr1 (267-314)||(4571208-4571255)
chr1 (265-314)||(4016514-4016563)
chr1 (267-314)||(21855098-21855145)
chr1 (274-314)||(17563902-17563942)
[»] chr7 (12 HSPs)
chr7 (267-318)||(29921716-29921767)
chr7 (268-313)||(29881565-29881610)
chr7 (274-314)||(29476037-29476077)
chr7 (268-313)||(29872022-29872067)
chr7 (267-311)||(19887441-19887485)
chr7 (267-314)||(19779898-19779945)
chr7 (273-308)||(29445359-29445394)
chr7 (267-314)||(29874828-29874875)
chr7 (268-314)||(19350826-19350872)
chr7 (265-314)||(19358204-19358253)
chr7 (267-308)||(29107119-29107160)
chr7 (269-314)||(29459762-29459807)
[»] chr5 (1 HSPs)
chr5 (267-314)||(24330614-24330661)
[»] chr4 (1 HSPs)
chr4 (266-308)||(29945854-29945896)
[»] chr2 (5 HSPs)
chr2 (266-308)||(29571551-29571593)
chr2 (266-308)||(29578340-29578382)
chr2 (266-308)||(29580895-29580937)
chr2 (266-308)||(29610184-29610226)
chr2 (268-317)||(20699215-20699264)
[»] chr3 (1 HSPs)
chr3 (31-98)||(3694138-3694205)
[»] chr8 (1 HSPs)
chr8 (267-308)||(27618724-27618765)


Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 4014729 - 4014680
Alignment:
Q  265 aagattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4014729 aagattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 4014680  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 4571208 - 4571255
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4571208 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 4571255  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 4016563 - 4016514
Alignment:
Q  265 aagattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4016563 aagattatgttgaaagtttagttccaattttttgaaagtaagtttctctt 4016514  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 21855145 - 21855098
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21855145 gattatgttgaaagcttagttccaagtttttgaaagtaagtttctctt 21855098  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 17563942 - 17563902
Alignment:
Q  274 ttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  17563942 ttgaaagcttagttcctattttttgaaagtaagttcctctt 17563902  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 29921767 - 29921716
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtttctcttatgt 318  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  29921767 gattatgttgaaagcttagttccaattttttgaaagtaagttcctattatgt 29921716  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 29881565 - 29881610
Alignment:
Q  268 attatgttgaaagcttagttccaattttttgaaagtaagtttctct 313  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||    
T  29881565 attatgttgaaagcttagtttcaattttttgaaagtaagttcctct 29881610  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 29476077 - 29476037
Alignment:
Q  274 ttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  29476077 ttgaaagcttagtttcaattttttgaaagtaagtttctctt 29476037  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 29872022 - 29872067
Alignment:
Q  268 attatgttgaaagcttagttccaattttttgaaagtaagtttctct 313  Q
    ||||||||||||| |||||| |||||||||||||||||||| ||||    
T  29872022 attatgttgaaagtttagtttcaattttttgaaagtaagttcctct 29872067  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 19887485 - 19887441
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtttct 311  Q
    ||||||||||||||||||||| |||| |||||| |||||||||||    
T  19887485 gattatgttgaaagcttagtttcaatcttttgagagtaagtttct 19887441  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 19779898 - 19779945
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    ||||||||||||||||||||| |||  |||||| ||||||||||||||    
T  19779898 gattatgttgaaagcttagtttcaaccttttgagagtaagtttctctt 19779945  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 308
Target Start/End: Complemental strand, 29445394 - 29445359
Alignment:
Q  273 gttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||||||||||||| ||||||||||||||||||||    
T  29445394 gttgaaagcttagtttcaattttttgaaagtaagtt 29445359  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 314
Target Start/End: Original strand, 29874828 - 29874875
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    |||||||||||||||||||||   |||| |||||||||||||||||||    
T  29874828 gattatgttgaaagcttagttttgatttgttgaaagtaagtttctctt 29874875  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 19350872 - 19350826
Alignment:
Q  268 attatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    |||||||||||||||||||| |||  | |||||||||||||||||||    
T  19350872 attatgttgaaagcttagtttcaacctcttgaaagtaagtttctctt 19350826  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 19358204 - 19358253
Alignment:
Q  265 aagattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    ||||||||||||||||||||||| ||   | |||||||||||||||||||    
T  19358204 aagattatgttgaaagcttagtttcatcctcttgaaagtaagtttctctt 19358253  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 29107119 - 29107160
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||| ||||||||||||||| |||| |||||||||||||||    
T  29107119 gattacgttgaaagcttagtttcaatattttgaaagtaagtt 29107160  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Complemental strand, 29459807 - 29459762
Alignment:
Q  269 ttatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    |||||||||||||||| || ||||||||| |||||||||| |||||    
T  29459807 ttatgttgaaagcttaatttcaatttttttaaagtaagttcctctt 29459762  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 267 - 314
Target Start/End: Complemental strand, 24330661 - 24330614
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtttctctt 314  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24330661 gattatgttgaaagcttagttccaagtttttgaaagtaagtttctctt 24330614  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 29945854 - 29945896
Alignment:
Q  266 agattatgttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  29945854 agattatgttgaaagcttagttccaatattttgaaagtaagtt 29945896  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 29571593 - 29571551
Alignment:
Q  266 agattatgttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  29571593 agattatgttgaaagcttagttccaatattttgaaagtaagtt 29571551  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 29578382 - 29578340
Alignment:
Q  266 agattatgttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  29578382 agattatgttgaaagcttagttccaatattttgaaagtaagtt 29578340  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 29580937 - 29580895
Alignment:
Q  266 agattatgttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  29580937 agattatgttgaaagcttagttccaatattttgaaagtaagtt 29580895  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 29610226 - 29610184
Alignment:
Q  266 agattatgttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  29610226 agattatgttgaaagcttagttccaatattttgaaagtaagtt 29610184  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 20699264 - 20699215
Alignment:
Q  268 attatgttgaaagcttagttccaattttttgaaagtaagtttctcttatg 317  Q
    ||||||||||||| |||||| ||| |||||||||||||||| ||||||||    
T  20699264 attatgttgaaagtttagtttcaactttttgaaagtaagttcctcttatg 20699215  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 98
Target Start/End: Original strand, 3694138 - 3694205
Alignment:
Q  31 cttattttactttttagttatcgaatgcaagcaaataagtttaataaagtatgttttcatatatgtta 98  Q
    |||||||| ||||||  ||||| ||||||||||||| | ||||||||| |||||||||| ||| ||||    
T  3694138 cttatttttcttttttattatcaaatgcaagcaaatcattttaataaattatgttttcaaatacgtta 3694205  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Original strand, 27618724 - 27618765
Alignment:
Q  267 gattatgttgaaagcttagttccaattttttgaaagtaagtt 308  Q
    ||||||||||||||||| ||| |||||| |||||||||||||    
T  27618724 gattatgttgaaagcttggtttcaatttcttgaaagtaagtt 27618765  T

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