View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17772_low_1 (Length: 443)
Name: NF17772_low_1
Description: NF17772
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17772_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 3 - 428
Target Start/End: Original strand, 29149406 - 29149838
Alignment:
| Q |
3 |
aagggttcaagagaacaagcgagaagggagactggtgtcttgtgaaaggtgtggttgata----cgtgtgatataatgctgttaagaattcaacctgatc |
98 |
Q |
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| T |
29149406 |
aagggttaaagagaacaagcgagaagggagactggtgtcttgtgaaaggtgtggttgatatatacgtgtgatataatgctgttaagaattcaacctgatc |
29149505 |
T |
|
| Q |
99 |
caactttctctttactcatgtggtcctcacttgtgatgttagtaatgtaataattagtatgtccaaaaatggacaagcacaacatgcagctgtgataaat |
198 |
Q |
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| T |
29149506 |
caactctgtcgttactcatgtggtcctcacttgtgatgttagtaatgtaataattagtatgtccaaaaatggacaagcacaacatgcagctgtgataaat |
29149605 |
T |
|
| Q |
199 |
gtt---ggtacaaaatgaaggactcgttaatgtcattgtgcaaa--tattcacaacctgtcactcaacttgcaaagtttttgtgattgtctgtcatcact |
293 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29149606 |
gttagtggtacaaaatgaaggactcgttaatgtcattgtgcaaaaatattcacaacctgtcactcaacttgcaaagttt--gtgattgtctgtcatcact |
29149703 |
T |
|
| Q |
294 |
acttgtcctttgtctttgagttgatatcaccattttcactatgaaccatgtaagtaggatgttagacaaagttactaaattaggctttgttgttctatat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29149704 |
acttgtcctttgtctttgagttgatatcaccattttcactatgaaccatgtaagtaggatgttagacaaagttactaaattaggctttgttgttctatat |
29149803 |
T |
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| Q |
394 |
acttcacccatttgcaaaattcagactttgtttat |
428 |
Q |
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| T |
29149804 |
acttcacccatttgcaaaattcagactttgtttat |
29149838 |
T |
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