View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17773_low_1 (Length: 475)
Name: NF17773_low_1
Description: NF17773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17773_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 28289563 - 28289956
Alignment:
| Q |
1 |
aagatattggttgttccgttccatctcacggcaatcttgaaaaatgggctttgcaggtaaccattgattattttgattctatagaattgttggaaattgg |
100 |
Q |
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| T |
28289563 |
aagatattggttgttccattccatctcacggcaatcttgaaaaatgggctttgcaggtaaccattgattattttgattctatagaattgttggaaattgg |
28289662 |
T |
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| Q |
101 |
ttattttaatcttgtccaaacatttcattcttacaaatatttattttctgcaaaaagtgtgatttccttgaatggcctctcaattttctgtaaaacatac |
200 |
Q |
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| T |
28289663 |
ttattttaatcttgtccaaacatttcattcttacaaatatttattttctgcaaaaagtgtgatttccttgaatggcctctcaattttctgtaaaacatac |
28289762 |
T |
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| Q |
201 |
agatttgtggactagtttacattgcacaattaaagcatacattgtggacatgttcttacaaaataacaataaaaataattgtgaccaaatatatattttc |
300 |
Q |
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| T |
28289763 |
agatttgtggactagtttacattgcacaattaaagcatacattgtggacatgttcttacaaaataacaataaaaataattgtgaccaaatatatattttc |
28289862 |
T |
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| Q |
301 |
agcttgtagataacatatttttcaatgataaagacgagaatttatgtcaataactaaaattcacagatttaagtgacaattagttttattgaac |
394 |
Q |
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| T |
28289863 |
agcttgtagataacatatttttcaatgataaagacaagaatttatgtcaataactaaaattcaaagatttaagtgacaattaattttattgaac |
28289956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 19250906 - 19250958
Alignment:
| Q |
407 |
tcttatgaagttaggaaagtgtctgttctaaacgcagagggggtttccttttct |
460 |
Q |
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| T |
19250906 |
tcttatgaagttaggaaagtgtctgttctaaacacgga-cgggtttccttttct |
19250958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 28281484 - 28281524
Alignment:
| Q |
30 |
ggcaatcttgaaaaatgggctttgcaggtaaccattgatta |
70 |
Q |
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| T |
28281484 |
ggcaatcttgaaaaatgggctctgcaggtaaccattcatta |
28281524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 437 - 471
Target Start/End: Original strand, 28289954 - 28289988
Alignment:
| Q |
437 |
aacgcagagggggtttccttttcttcttttcactc |
471 |
Q |
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| T |
28289954 |
aacgcagagggggtttccttttcttctattcactc |
28289988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 28300631 - 28300684
Alignment:
| Q |
7 |
ttggttgttccgttccatctcacggcaatcttgaaaaatgggctttgcaggtaa |
60 |
Q |
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| T |
28300631 |
ttggttgttcgattccgtctcatggtaatcttgaaaaatgggctgtgcaggtaa |
28300684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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