View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17773_low_2 (Length: 405)

Name: NF17773_low_2
Description: NF17773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17773_low_2
NF17773_low_2
[»] chr4 (14 HSPs)
chr4 (25-309)||(7885275-7885559)
chr4 (320-388)||(21228389-21228457)
chr4 (121-287)||(4320525-4320691)
chr4 (58-287)||(4344592-4344821)
chr4 (121-263)||(4123869-4124011)
chr4 (58-287)||(4361023-4361252)
chr4 (166-270)||(6753014-6753118)
chr4 (166-269)||(6651121-6651224)
chr4 (166-270)||(6545371-6545475)
chr4 (58-263)||(4335291-4335496)
chr4 (146-251)||(4133367-4133472)
chr4 (166-243)||(6498476-6498553)
chr4 (173-270)||(6758785-6758882)
chr4 (136-240)||(6761316-6761420)
[»] chr7 (3 HSPs)
chr7 (25-309)||(18935299-18935583)
chr7 (25-309)||(34724470-34724754)
chr7 (89-263)||(36213759-36213933)
[»] scaffold0294 (1 HSPs)
scaffold0294 (58-309)||(8784-9035)
[»] chr6 (15 HSPs)
chr6 (61-263)||(5344810-5345012)
chr6 (121-263)||(5181857-5181999)
chr6 (49-263)||(5066624-5066838)
chr6 (58-287)||(5096654-5096883)
chr6 (58-263)||(5073838-5074043)
chr6 (58-270)||(5350340-5350552)
chr6 (61-264)||(5128346-5128549)
chr6 (181-261)||(5102546-5102626)
chr6 (127-263)||(5383341-5383477)
chr6 (198-269)||(5243837-5243908)
chr6 (121-263)||(5176748-5176890)
chr6 (61-263)||(5354544-5354746)
chr6 (58-167)||(5425856-5425965)
chr6 (121-263)||(5278575-5278717)
chr6 (121-281)||(5396959-5397119)
[»] scaffold0813 (1 HSPs)
scaffold0813 (166-269)||(4750-4853)
[»] chr5 (1 HSPs)
chr5 (121-264)||(8877618-8877761)
[»] chr8 (1 HSPs)
chr8 (184-263)||(31175919-31175998)
[»] chr3 (5 HSPs)
chr3 (127-188)||(47986857-47986918)
chr3 (127-188)||(47996144-47996205)
chr3 (127-188)||(48005431-48005492)
chr3 (127-188)||(48014716-48014777)
chr3 (199-263)||(32411133-32411197)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 309
Target Start/End: Complemental strand, 7885559 - 7885275
Alignment:
Q  25 ataaacttgaaagattgtacaggtcttcgtgaacttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattg 124  Q
    ||||| ||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||| | ||||| |||||| |||||||||| ||||||||||    
T  7885559 ataaatttgaaagattgtacaggccttcgagaacttccaaggagcatatataagttagactcgctgaaaacactcattctgtctggatgtacaaaaattg 7885460  T
Q  125 aaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaa 224  Q
    | ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||| |||    
T  7885459 acaagttagaagaggatatagaacaaatgaaatctttaaccaccttggttgcggatgacactgctatcacaagagtgccctttgcagtagtaagatcaaa 7885360  T
Q  225 aagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctattattcagtctttgttgtctcca 309  Q
    ||||||||||| ||||||||| ||||| ||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||||    
T  7885359 aagcattgcatttatttctctatgtggttataaaggatctgcacgtagagtgtttccttctattattcagtcttggctgtctcca 7885275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 21228389 - 21228457
Alignment:
Q  320 ctcaattgaatcaaactgtggcaagtatttgtgagggattctcaaatatcgggacttcgacatcaattg 388  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21228389 ctcaattgaatcaaactgtagcaagtatttgtgagggattctcaaatatcgggacttggacatcaattg 21228457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 121 - 287
Target Start/End: Complemental strand, 4320691 - 4320525
Alignment:
Q  121 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 220  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||||||| || ||||  |||| |||| ||| ||| |||| |||||| |||||||||| |    
T  4320691 attgacaagttggaagaggacttggaacaaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggt 4320592  T
Q  221 aaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctat 287  Q
     ||||||||||| || ||||||||| ||||| |||||||||||  |||||   ||||||||||||||    
T  4320591 caaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctat 4320525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 287
Target Start/End: Original strand, 4344592 - 4344821
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    |||||||||| |||||||| |||  | ||  | |||||||||||| | ||||||||   ||  ||||| ||||||||||||||  |  |||||||| |||    
T  4344592 cttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgtttaatgattgacaagttggaagaggacttggaacaaatggaat 4344691  T
Q  158 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 257  Q
    ||||||||||  || ||||  ||||||||||||| ||| |||| |||||| || ||||||| | |||| |||||| || ||||||| | ||||| |||||    
T  4344692 ctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatga 4344791  T
Q  258 aggatttgcacgtagagtgtttccttctat 287  Q
    ||||||  |||||   ||||||||||||||    
T  4344792 aggattctcacgtgatgtgtttccttctat 4344821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 4124011 - 4123869
Alignment:
Q  121 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 220  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||||||  || ||||  |||| |||||||| ||| ||||||||||| |  ||||||| |    
T  4124011 attgacaagttggaagaggagttggaacaaatggaatctttaaccactctgattgcaaataatactgctataacaaaagtgcccttttcggtagtaaggt 4123912  T
Q  221 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 263  Q
     ||||||||||| || ||||||||| ||||| |||||||||||    
T  4123911 caaaaagcattggatttatttctctgtgtggatatgaaggatt 4123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 287
Target Start/End: Original strand, 4361023 - 4361252
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    |||||||||| |||||||| |||  | ||  | |||||||||||| | ||||||||  |||  ||||| | ||||||||||||  |  |||||||| |||    
T  4361023 cttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgttcaatgattgacacgttggaagaggacttggaacaaatggaat 4361122  T
Q  158 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 257  Q
    ||||||||||  || ||||  ||||||||| ||| ||| |||| |||||| || | ||||||| |||| |||||| || ||||||| | ||||| |||||    
T  4361123 ctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatga 4361222  T
Q  258 aggatttgcacgtagagtgtttccttctat 287  Q
    ||||||  |||||   ||||||||||||||    
T  4361223 aggattctcacgtgatgtgtttccttctat 4361252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 6753014 - 6753118
Alignment:
Q  166 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 265  Q
    |||||| |||||||||| |||||||| ||| ||||||||||| || |||||||||  |||||||||| |||||||||| |  |||||| ||||||||||     
T  6753014 accttgattgcggataagactgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggatttt 6753113  T
Q  266 cacgt 270  Q
    |||||    
T  6753114 cacgt 6753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 269
Target Start/End: Original strand, 6651121 - 6651224
Alignment:
Q  166 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 265  Q
    |||||| |||||||||| |||||||| ||| ||||||| ||| || ||||||||| || || ||||| |||||||||||| ||||||| ||||||||||     
T  6651121 accttgattgcggataagactgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggatttt 6651220  T
Q  266 cacg 269  Q
    ||||    
T  6651221 cacg 6651224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 166 - 270
Target Start/End: Complemental strand, 6545475 - 6545371
Alignment:
Q  166 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 265  Q
    |||||| |||||||||| |||||||| ||| ||||||||||| || |||| ||||  |||||||||| |||||||||| |  |||||| ||||||||||     
T  6545475 accttgattgcggataagactgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggatttt 6545376  T
Q  266 cacgt 270  Q
    |||||    
T  6545375 cacgt 6545371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 263
Target Start/End: Original strand, 4335291 - 4335496
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    |||||||||| |||||||| |||  | ||  | |||||||||||| | || |||||   ||| ||||| ||||||||||||||  |  |||||||| |||    
T  4335291 cttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattgacaagttggaagaggacttggaacaaatggaat 4335390  T
Q  158 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 257  Q
    ||||||||||  |  | || |||||||||| ||| ||| ||||||||||| || ||||||  | |||||||||||  ||||| ||| | ||||| |||||    
T  4335391 ctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatga 4335490  T
Q  258 aggatt 263  Q
    ||||||    
T  4335491 aggatt 4335496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 251
Target Start/End: Complemental strand, 4133472 - 4133367
Alignment:
Q  146 aacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctct 245  Q
    |||||||| | |||||||||||  || ||| |||||||||||| || ||| ||||||||||| || | | ||| | ||||||||||| ||||||||||||    
T  4133472 aacaaatggagtctttaaccactctgattgtggataacactgcaataacaaaagtgcccttttcagtcgcaaggtcaaaaagcattgaatatatttctct 4133373  T
Q  246 ctgtgg 251  Q
     |||||    
T  4133372 ttgtgg 4133367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 243
Target Start/End: Complemental strand, 6498553 - 6498476
Alignment:
Q  166 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttct 243  Q
    |||||| |||||||||| |||||||| ||| |||| |||||| || ||||||||| ||||||||||| ||| ||||||    
T  6498553 accttgattgcggataagactgctataacaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttct 6498476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 6758785 - 6758882
Alignment:
Q  173 ttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgt 270  Q
    |||||||||| ||||| || || ||||| ||| || || || |||||| ||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  6758785 ttgcggataagactgcaataacggaagtacccatttcaatattaagattaaaaagcattagatttatttctctgtgtggctttgaaggatttgcacgt 6758882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 6761316 - 6761420
Alignment:
Q  136 gaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcat 235  Q
    ||||| ||| |||| ||| |||| || || |||||| |||||||||| |||||||| ||| ||||||||||| || | |||||||  ||||| |||| ||    
T  6761316 gaggacatagaacagatggaatcgttcacaaccttgattgcggataagactgctataacaaaagtgcccttttcaattgtaagattcaaaagtattggat 6761415  T
Q  236 atatt 240  Q
    |||||    
T  6761416 atatt 6761420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 25 - 309
Target Start/End: Original strand, 18935299 - 18935583
Alignment:
Q  25 ataaacttgaaagattgtacaggtcttcgtgaacttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattg 124  Q
    ||||| |||||||| |||||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||| |||||||||| |||||||| ||||||||||    
T  18935299 ataaatttgaaagactgtacaggcctttgtgaacttccaagaagcatctataaattagagtcggtcaaagctctcattttatctggatgtacaaaaattg 18935398  T
Q  125 aaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaa 224  Q
    | |||||||||||||| ||| |||| |||| |||||| |||||| ||||||||||||| |||||| | |||  ||||||||||||| ||||||||| |||    
T  18935399 acaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaa 18935498  T
Q  225 aagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctattattcagtctttgttgtctcca 309  Q
    |||||||| || |||||| || ||||| | ||||||||| |||||||  ||||||||||| ||||||||||||| | ||||||||    
T  18935499 aagcattggatttatttcactgtgtggatttgaaggattagcacgtaatgtgtttccttcaattattcagtcttggatgtctcca 18935583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 25 - 309
Target Start/End: Complemental strand, 34724754 - 34724470
Alignment:
Q  25 ataaacttgaaagattgtacaggtcttcgtgaacttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattg 124  Q
    ||||| |||||||| |||||||| ||| |||| |||||||||||||||||||| ||  | || || |||||||||||| |||||||||| ||||||||||    
T  34724754 ataaatttgaaagactgtacaggcctttgtgagcttccaagaagcatctataaattgaagtcagtaaaaactctcattgtgtctggatgtacaaaaattg 34724655  T
Q  125 aaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaa 224  Q
    | |||||||||||||| ||| |||||||||  ||||| ||||   | ||||||||||| ||| || | |||   || || |||||| ||||||||| |||    
T  34724654 acaagttggaagaggacatagaacaaatgacttctttgaccattctagttgcggataagacttctgtaacaagggttccatttgcagtagtaagatcaaa 34724555  T
Q  225 aagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctattattcagtctttgttgtctcca 309  Q
    |||||||| || |||||| || ||||| | |||||||||||||||||  ||||| ||||| ||||||||||||| | ||||||||    
T  34724554 aagcattggatttatttcactttgtggatttgaaggatttgcacgtaatgtgttcccttcaattattcagtcttggatgtctcca 34724470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 263
Target Start/End: Complemental strand, 36213933 - 36213759
Alignment:
Q  89 ttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 188  Q
    |||||||||||||| | ||||||||  |||| ||||| || ||||||||||| ||  |||| ||| ||||||||||||||||| ||||  ||||||||||    
T  36213933 ttaaaactctcattctttctggatgttcaaagattgacaaattggaagaggacatggaacagatggaatctttaaccaccttgattgcaaataacactgc 36213834  T
Q  189 tatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 263  Q
     || |||  |||||| ||| || |||||||||  |||||||| || ||||| ||| | || ||||||||||||||    
T  36213833 aataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggatt 36213759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 58 - 309
Target Start/End: Complemental strand, 9035 - 8784
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    |||||||||||||||||||||||  | ||  | |||||||||||| | ||||| || | ||  ||||| |||||||||||||| ||| |||| ||| |||    
T  9035 cttccaagaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacaagttggaagaggacatagaacagatggaat 8936  T
Q  158 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 257  Q
    ||||||||||  || |||| |||||||||||  | |||  |||||||||| || ||||||| | |||||| |||| |||||||||| | || ||| ||||    
T  8935 ctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccatga 8836  T
Q  258 aggatttgcacgtagagtgtttccttctattattcagtctttgttgtctcca 309  Q
    ||||||  |||||   |||||||| ||||| ||| |||||| | ||||||||    
T  8835 aggattctcacgtgatgtgtttccatctatcattaagtcttggatgtctcca 8784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 61 - 263
Target Start/End: Original strand, 5344810 - 5345012
Alignment:
Q  61 ccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctt 160  Q
    ||||||||||||||||||||  | ||  | |||||||||||| | || || ||   ||| ||||| ||||||||||||||  || |||||||||||||||    
T  5344810 ccaagaagcatctataagttgaattctctaaaaactctcattctttcgggttgtttaaagattgacaagttggaagaggacttagaacaaatgaaatctt 5344909  T
Q  161 taaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagg 260  Q
    ||||||   || | ||  |||||||||| || ||| |||| ||||||  | ||||||| | ||||||||||| |||||||||||| ||||||||||||||    
T  5344910 taaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaagg 5345009  T
Q  261 att 263  Q
    |||    
T  5345010 att 5345012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 263
Target Start/End: Complemental strand, 5181999 - 5181857
Alignment:
Q  121 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 220  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||||| ||| ||||  |||||||||| || |||  |||||| ||| || ||||||  |    
T  5181999 attgacaagttggaagaggatttggaacaaatgaaatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagtaaagt 5181900  T
Q  221 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 263  Q
      ||||||||||||||||||||  | ||||| |||||||||||    
T  5181899 ccaaaagcattgcatatatttccttgtgtggatatgaaggatt 5181857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 263
Target Start/End: Complemental strand, 5066838 - 5066624
Alignment:
Q  49 cttcgtgaacttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaac 148  Q
    |||||| | |||||||||||||||||||||||  | ||  |||||||||||||| | ||||| || | ||  ||||| ||||| |||||||| ||| |||    
T  5066838 cttcgtaaccttccaagaagcatctataagttgaaatctcttaaaactctcattctttctgggtgtataatgattgacaagttagaagaggacatagaac 5066739  T
Q  149 aaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctg 248  Q
    ||||| |||||||||||||  || ||||  |||| ||||| || | |  | | |||||| || ||||||| | ||||||||||| ||| || ||| | ||    
T  5066738 aaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtg 5066639  T
Q  249 tggctatgaaggatt 263  Q
     ||||||||||||||    
T  5066638 cggctatgaaggatt 5066624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 287
Target Start/End: Original strand, 5096654 - 5096883
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    |||||| ||||||||||||||||  | ||  | |||||||||||| | ||||| || | ||  |||||  ||||||||||||| ||| |||||||| |||    
T  5096654 cttccaggaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacgagttggaagaggacatagaacaaatggaat 5096753  T
Q  158 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 257  Q
    | |||||||   || ||||  |||||||||  || | |  ||| |||||| || ||||||| | ||||||||||| ||| |||||||| |||||| ||||    
T  5096754 cattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatga 5096853  T
Q  258 aggatttgcacgtagagtgtttccttctat 287  Q
    ||||||| |||||   |||||||| |||||    
T  5096854 aggattttcacgtgatgtgtttccgtctat 5096883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 263
Target Start/End: Complemental strand, 5074043 - 5073838
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    ||||||||||| |||||||||||  | ||  | |||||||||||| | || || ||  |||  ||||| ||||||||||||||  || |||| |||| ||    
T  5074043 cttccaagaagtatctataagttgaaatctctaaaaactctcattctttccgggtgttcaatgattgacaagttggaagaggacttagaacagatgacat 5073944  T
Q  158 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 257  Q
    ||||||||||  || | ||  ||||||| || || |||  |||||||||| || ||||||| |  |||||||||| |||||||||| | || ||||||||    
T  5073943 ctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatga 5073844  T
Q  258 aggatt 263  Q
    ||||||    
T  5073843 aggatt 5073838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 270
Target Start/End: Original strand, 5350340 - 5350552
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    |||||||||||||||| ||||||  | ||  | |||||||||||| | || || || | ||  ||||| |||||||||||||| ||| |||||||| |||    
T  5350340 cttccaagaagcatctttaagttgaaatctctcaaaactctcattctttcagggtgtataatgattgacaagttggaagaggacatagaacaaatggaat 5350439  T
Q  158 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 257  Q
    ||||||||||  || ||||  |||| ||||| || | |  | | |||||| || ||||||| | ||||||||||| ||| || ||| | || ||||||||    
T  5350440 ctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatga 5350539  T
Q  258 aggatttgcacgt 270  Q
    ||||||| |||||    
T  5350540 aggattttcacgt 5350552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 264
Target Start/End: Complemental strand, 5128549 - 5128346
Alignment:
Q  61 ccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctt 160  Q
    ||||||||||||||||||||  | ||  | |||||||||||| | ||||| || | ||  ||||| ||||||||||||||  |  |||||||| |||| |    
T  5128549 ccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtataatgattgacaagttggaagaggacttggaacaaatggaatcat 5128450  T
Q  161 taaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagg 260  Q
    |||| ||  || ||||  |||||||||| || | |  ||| |||||| || ||||||| | ||||||||||| |||||| ||||| || ||| |||||||    
T  5128449 taacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggccatgaagg 5128350  T
Q  261 attt 264  Q
    ||||    
T  5128349 attt 5128346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 5102626 - 5102546
Alignment:
Q  181 aacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagga 261  Q
    |||||||| || |||  |||||||||| || ||||||| | ||||||||||| |||||| ||||| |||||||||||||||    
T  5102626 aacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaagga 5102546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 5383341 - 5383477
Alignment:
Q  127 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaa 226  Q
    |||||||||||||| ||| |||||||| |||||||||| || ||| |||| ||||||||||| || |||  ||| ||| || || |  |||| | |||||    
T  5383341 aagttggaagaggacatagaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagagttcccctttcaattttaaggtcaaaaa 5383440  T
Q  227 gcattgcatatatttctctctgtggctatgaaggatt 263  Q
    | |||| |||||||||| | || ||| ||||||||||    
T  5383441 gtattgtatatatttctttgtgcggccatgaaggatt 5383477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 5243908 - 5243837
Alignment:
Q  198 agtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacg 269  Q
    |||||||||| || ||||||| | ||||||||| | |||||||||| | |||||||||||||||||| ||||    
T  5243908 agtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacg 5243837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 5176748 - 5176890
Alignment:
Q  121 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 220  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||| ||  || ||||  |||||||||| || |||  |||||||||  || ||||||| |    
T  5176748 attgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggt 5176847  T
Q  221 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 263  Q
     ||||||||||| ||| || ||| | || ||||||||||||||    
T  5176848 caaaaagcattggatacatctctttgtgcggctatgaaggatt 5176890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 263
Target Start/End: Complemental strand, 5354746 - 5354544
Alignment:
Q  61 ccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctt 160  Q
    |||||||||||||| |||||  | ||  | |||||||||||| | ||||| || | |||  | || ||||||||||||||  |  ||||| || ||||||    
T  5354746 ccaagaagcatctacaagttgaaatctttgaaaactctcattctttctggttgtaaaaagttagacaagttggaagaggacttggaacaattggaatctt 5354647  T
Q  161 taaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagg 260  Q
    |||||||| || ||||  || ||||||| || |||  ||| |||||  || |||| || |  |||||||||| |||||||||| | ||||||||||||||    
T  5354646 taaccaccctgcttgcaaatgacactgcaataacaagagtacccttctcaatagttagttccaaaagcattggatatatttctttatgtggctatgaagg 5354547  T
Q  261 att 263  Q
    |||    
T  5354546 att 5354544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 5425856 - 5425965
Alignment:
Q  58 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 157  Q
    |||||||||| ||||||||||||  | ||  | |||||||||||| | ||||| ||   ||  ||||| |||||||||||||| ||| |||||||| |||    
T  5425856 cttccaagaaacatctataagttgaaatctctgaaaactctcattctttctgggtgtgtaatgattgacaagttggaagaggacatagaacaaatggaat 5425955  T
Q  158 ctttaaccac 167  Q
    ||||||||||    
T  5425956 ctttaaccac 5425965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 263
Target Start/End: Original strand, 5278575 - 5278717
Alignment:
Q  121 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 220  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||| ||  || ||||  |||||||||| || |||  |||||||||  |  ||||||| |    
T  5278575 attgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggt 5278674  T
Q  221 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 263  Q
     ||||||||||| ||| || ||| | || ||||||||||||||    
T  5278675 caaaaagcattggatacatctctttgtgcggctatgaaggatt 5278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 121 - 281
Target Start/End: Original strand, 5396959 - 5397119
Alignment:
Q  121 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 220  Q
    ||||| || |||||||| ||| |  |||| ||| ||||||||||||||||||||||  |||||||||| || | |  |||||| ||| || |  |||| |    
T  5396959 attgacaaattggaagaagatttggaacagatggaatctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggt 5397058  T
Q  221 aaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttcc 281  Q
     ||||||||||| || ||| ||| | || || |||||||||||| || ||  |||||||||    
T  5397059 taaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttcc 5397119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 166 - 269
Target Start/End: Complemental strand, 4853 - 4750
Alignment:
Q  166 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 265  Q
    |||||| |||||||||| |||||||| ||| ||||||| ||| || ||||||||| || || ||||| |||||||||||| ||||||| ||||||||||     
T  4853 accttgattgcggataagactgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggatttt 4754  T
Q  266 cacg 269  Q
    ||||    
T  4753 cacg 4750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 121 - 264
Target Start/End: Original strand, 8877618 - 8877761
Alignment:
Q  121 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 220  Q
    ||||| |||||||| |||||  || |||| |||||||||||||||||  || ||||  |||||||||| || | |  ||| || ||| |||||||||| |    
T  8877618 attgacaagttggaggaggacttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggt 8877717  T
Q  221 aaaaaagcattgcatatatttctctctgtggctatgaaggattt 264  Q
     ||||||||||| |||||||||| | || |||||||||||||||    
T  8877718 caaaaagcattggatatatttctttgtgcggctatgaaggattt 8877761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 31175919 - 31175998
Alignment:
Q  184 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 263  Q
    |||| ||||| | ||||||||| | || ||| ||||| |||||||||||||||||| ||||| ||||| |||||||||||    
T  31175919 actggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggatt 31175998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 47986918 - 47986857
Alignment:
Q  127 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 188  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  47986918 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 47986857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 47996205 - 47996144
Alignment:
Q  127 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 188  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  47996205 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 47996144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 48005492 - 48005431
Alignment:
Q  127 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 188  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  48005492 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 48005431  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 48014777 - 48014716
Alignment:
Q  127 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 188  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  48014777 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 48014716  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 263
Target Start/End: Complemental strand, 32411197 - 32411133
Alignment:
Q  199 gtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 263  Q
    ||||||| | || |||||||||  |||||||| |||||||| ||||| ||||| |||||||||||    
T  32411197 gtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggatt 32411133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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