View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17773_low_3 (Length: 379)
Name: NF17773_low_3
Description: NF17773
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17773_low_3 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 38608612 - 38608252
Alignment:
| Q |
1 |
aggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38608612 |
aggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccatt |
38608513 |
T |
|
| Q |
101 |
ccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608512 |
ccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtga |
38608413 |
T |
|
| Q |
201 |
cggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38608412 |
cggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacg |
38608313 |
T |
|
| Q |
301 |
gaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38608312 |
gaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
38608252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 38793395 - 38793035
Alignment:
| Q |
1 |
aggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38793395 |
aggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccatt |
38793296 |
T |
|
| Q |
101 |
ccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38793295 |
ccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtga |
38793196 |
T |
|
| Q |
201 |
cggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38793195 |
cggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacg |
38793096 |
T |
|
| Q |
301 |
gaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38793095 |
gaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
38793035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 38121511 - 38121871
Alignment:
| Q |
1 |
aggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccatt |
100 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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|
| T |
38121511 |
aggatgaaacggaaaggagagagaactcattctctcaacgtcgcaagaaaacggagaaagcttagaggcgaaaccttgaaggccgtgaacaacaaccatt |
38121610 |
T |
|
| Q |
101 |
ccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtga |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||| ||||| ||||||||| |||||||||| |
|
|
| T |
38121611 |
ccgttgttgaatagatccggttgagtaatctcaacgcctccgatgaagacttttggagcactgccggaagtgttgttctgatgaatcgactcggaagtga |
38121710 |
T |
|
| Q |
201 |
cggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacg |
300 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||| |||||||||||||||| ||| || | ||| ||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
38121711 |
cggttacgcaacggccgggactgagagtctcaatcttggtgccaaaagcaagtcgccgaagatattcgatggtgaatatacctggaactatgtgttcacg |
38121810 |
T |
|
| Q |
301 |
gaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
38121811 |
aaggagattcggaacagagcaagaaaagcaagtgcgaagcgatgcatcagagggagcgaaa |
38121871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 28731085 - 28731445
Alignment:
| Q |
1 |
aggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28731085 |
aggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccatt |
28731184 |
T |
|
| Q |
101 |
ccgttgttgaatagatccggttgagcaatctcaacgcctccgatgaaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtga |
200 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||| |||||||||| |
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|
| T |
28731185 |
ccgttgttgaatagatctggttgagtaatctcaacgcctccgatgaatacttttggagcaccgccggaagtgctgttcggatgaatcgactcggaagtga |
28731284 |
T |
|
| Q |
201 |
cggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagtgaataaacctggaacgatgtgttcacg |
300 |
Q |
| |
|
| |||| ||||||||| |||||||| |||||||||||||||||||||| ||| || | ||| ||||| ||||||| ||||||||||||||||||||| |
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|
| T |
28731285 |
cagttacgcaacggccgggactgagagtctcgatcttggtgccaaaagcaagacgccggagatattcgatggtgaatatacctggaacgatgtgttcacg |
28731384 |
T |
|
| Q |
301 |
gaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
361 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| | ||| ||||| |||||||||||| |
|
|
| T |
28731385 |
gaggagattcggaacagagcaagaaaaacaagtgcggatcgatgcatcagagggagcgaaa |
28731445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 174 - 361
Target Start/End: Original strand, 31529212 - 31529399
Alignment:
| Q |
174 |
tgttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagt |
273 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||| ||| || | ||| ||||| || |
|
|
| T |
31529212 |
tgttcggatgaatcgactcggaagtgacggttacgcaacggccgggactgagagtctcaatcttggtgccaaaagcaagtcgccggagatattcgatggt |
31529311 |
T |
|
| Q |
274 |
gaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
361 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31529312 |
gaatatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcagagggagcgaaa |
31529399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 174 - 361
Target Start/End: Original strand, 51801280 - 51801467
Alignment:
| Q |
174 |
tgttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagt |
273 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||| ||| || | || | ||| || |
|
|
| T |
51801280 |
tgttcggatgaatcgaatcggaagtgacgattacgcaacggccgggactgagagtctcgatcttggtgccaaaagcaagtcgccggaggtatttgatggt |
51801379 |
T |
|
| Q |
274 |
gaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagcgaaa |
361 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
51801380 |
gaatatatctggaacgatgtgttcacggaggagattcggaacacagcaagaaaagcaagtgtgaagcgaagtatcagagggagcgaaa |
51801467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 174 - 357
Target Start/End: Complemental strand, 34876008 - 34875825
Alignment:
| Q |
174 |
tgttcgaatgaatcgaatcggaagtgacggttatgcaacggcctggactgagcgtctcgatcttggtgccaaaaggaagcgtacgcaaatactcgatagt |
273 |
Q |
| |
|
|||||| ||||||||| |||||||||| ||||| ||||||||| |||||||| |||||||||||||||||||||| ||| || | ||| ||||| || |
|
|
| T |
34876008 |
tgttcggatgaatcgactcggaagtgatggttacgcaacggccgggactgagagtctcgatcttggtgccaaaagcaagtcgccggagatattcgatggt |
34875909 |
T |
|
| Q |
274 |
gaataaacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgcgaagcgaagcatcggagggagc |
357 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
34875908 |
gaatatacctggaacgatgtgttcacggaggagattcggaacagagcaagaaaagcaagtgtgaagcgaagcatcaaagggagc |
34875825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 34044 - 34165
Alignment:
| Q |
2 |
ggatgaaacggaaaggagagtgaagtcattctctcaacgtcacaagaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccattc |
101 |
Q |
| |
|
||||| ||||| || ||||| || ||||| ||||| ||||| ||| |||||||||| || | ||||| ||||||||||||||| |||| ||| ||||| | |
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| T |
34044 |
ggatggaacgggaacgagagcgaggtcatcctctccacgtcgcaataaaacggagagagcggagagatgaaaccttgaaggccatgaataaccaccatgc |
34143 |
T |
|
| Q |
102 |
cgttgttgaatagatccggttg |
123 |
Q |
| |
|
|||||||||| ||||| ||||| |
|
|
| T |
34144 |
cgttgttgaagagatcaggttg |
34165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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